New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 4960993125 (1.410)8 (0.100) 7/230 NT 6.6% intergenic (‑130/+134) fliE/atoC flagellar hook‑basal body complex protein FliE/two‑component system DNA‑binding transcriptional activator AtoC
?NC_002947 = 4961078 108 (1.310)intergenic (‑215/+49) fliE/atoC flagellar hook‑basal body complex protein FliE/two‑component system DNA‑binding transcriptional activator AtoC

Only 100 of 164 total aligned reads displayed.

AACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTG  >  NC_002947/4960849‑4961142
                                                                                                                                                |                                                                                                                                                      
aaCACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTcg                                                                                                                                                   >  1:1077058/1‑150 (MQ=255)
aaCACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTcg                                                                                                                                                   >  1:1454539/1‑150 (MQ=255)
     cTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATa                                                                                                                                              >  2:331059/1‑150 (MQ=255)
         gCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGc                                                                                                                                          <  1:694813/150‑1 (MQ=255)
                  ccTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCg                                                                                                                                 >  2:610863/1‑150 (MQ=255)
                    ttCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGc                                                                                                                               >  1:887242/1‑150 (MQ=255)
                         tctcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCgg                                                                                                                          >  1:840155/1‑150 (MQ=255)
                         tctcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCgg                                                                                                                          <  2:355133/150‑1 (MQ=255)
                           tcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCg                                                                                                                        >  2:1675418/1‑150 (MQ=255)
                             cTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGAt                                                                                                                      >  2:424340/1‑150 (MQ=255)
                               gCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCt                                                                                                                    >  2:1967406/1‑150 (MQ=255)
                                  gCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGa                                                                                                                       <  2:1028030/144‑1 (MQ=255)
                                   ccGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCa                                                                                                                                      <  2:669771/128‑1 (MQ=255)
                                     gCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGcccc                                                                                                                            <  1:1533384/136‑1 (MQ=255)
                                     gCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGcccc                                                                                                                            >  2:1533384/1‑136 (MQ=255)
                                           ttttGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGc                                                                                                        <  1:331059/150‑1 (MQ=255)
                                                aCAGTCATGCGGCGAACGACCTACTGAAAGCAACAAATGTTCCAGCCTTCGCAACTCATTTCCCATAGATCACACAATTCCTGCAGGAGCGGCCTTGCGTCGAGATAGGGCGGGAGAGCGGCACCGGCGATGAGTGCGGCGGAGCGGaaa                                                                                                   >  2:1002532/1‑149 (MQ=255)
                                                  aGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGAc                                                                                                 <  2:1254547/150‑1 (MQ=255)
                                                    tCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCt                                                                                               >  1:2220872/1‑150 (MQ=255)
                                                      aTGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTg‑g                                                                                            >  1:1561896/1‑150 (MQ=255)
                                                       tGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTg‑gg                                                                                           <  1:2092290/150‑1 (MQ=255)
                                                        gcggcgAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTg‑ggg                                                                                          <  2:840155/150‑1 (MQ=255)
                                                             gAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCt                                                                                     <  1:424340/150‑1 (MQ=255)
                                                              aaTGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCtt                                                                                    >  1:1816274/1‑150 (MQ=255)
                                                                  acctacctAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTcgcg                                                                                >  2:887472/1‑150 (MQ=255)
                                                                    ctacctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGc                                                                                                                               <  2:1810067/102‑1 (MQ=255)
                                                                    ctacctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCttt                                                                                                                  <  1:1914893/115‑1 (MQ=255)
                                                                    ctacctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTg                                                                                                                 <  1:574071/116‑1 (MQ=255)
                                                                    ctacctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGcc                                                                              >  1:1584717/1‑150 (MQ=255)
                                                                     tacctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGccc                                                                             >  2:1583064/1‑150 (MQ=255)
                                                                        ctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCAt                                                                          >  2:737224/1‑150 (MQ=255)
                                                                         taAAGCAACAAAGGTGCCAGCCTTTGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCAtt                                                                         >  2:771916/1‑150 (MQ=255)
                                                                         taAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGtgtcgcgaatggggcgcgaagcggccccaggtcttcagctccgccgcaaagatcgccggggccgctctgcggccctat                                                                          >  2:249940‑M1/1‑72 (MQ=255)
                                                                         taAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTg                                                                                                                 <  2:1877896/111‑1 (MQ=255)
                                                                         taAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTg                                                                                                                 >  1:1877896/1‑111 (MQ=255)
                                                                           aaGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCTCACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTcg                                                                       >  2:104653/1‑150 (MQ=255)
                                                                            agaaacaaAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTcgc                                                                      >  1:2407924/4‑150 (MQ=255)
                                                                             gCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTcgc                                                                      <  1:617949/149‑1 (MQ=255)
                                                                             gCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTcgc                                                                      >  2:617949/1‑149 (MQ=255)
                                                                              caacaaAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGa                                                                    <  1:1310952/150‑1 (MQ=255)
                                                                               aacaaAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTg‑gg                                                                                           >  2:102715/1‑126 (MQ=255)
                                                                               aacaaAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTg‑gg                                                                                           <  1:102715/126‑1 (MQ=255)
                                                                               aacaaAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGac                                                                   <  1:887472/150‑1 (MQ=255)
                                                                                  aaaGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGAccca                                                                >  2:1094930/1‑150 (MQ=255)
                                                                                    aGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACAcaag                                                              >  2:1696898‑M2/1‑146 (MQ=255)
                                                                                     ggTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGtgtcgcgaatggggcgcgaagcggccccaggtcttcagctccgccgcaaagatcgccggggccgctctgcggccctatcgcgacgcaagg                                                              <  1:2344530‑M1/150‑91 (MQ=255)
                                                                                     ggTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACAcaagg                                                             >  2:2100339‑M2/1‑145 (MQ=255)
                                                                                      gTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGcccc                                                                            <  1:1540008/134‑1 (MQ=255)
                                                                                          cAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGtt                                                        >  1:2074389/1‑150 (MQ=255)
                                                                                          cAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGtt                                                        >  1:115117/1‑150 (MQ=255)
                                                                                            gCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTcg                                                                                  >  2:1766343/1‑122 (MQ=255)
                                                                                            gCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTcg                                                                                  <  1:1766343/122‑1 (MQ=255)
                                                                                             ccTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCTTCGCCGGCGATCTTTGCGGCCAAGAT‑AAGTTCAGCTAGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTccc                                                     >  1:2341818/1‑150 (MQ=255)
                                                                                             ccTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTccc                                                     >  1:2394783/1‑150 (MQ=255)
                                                                                               ttCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCgcgc                                                                               <  2:1525736/122‑1 (MQ=255)
                                                                                                  gCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACaga                                                >  2:2221303/1‑150 (MQ=255)
                                                                                                   cAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACAcaag                                                              <  1:851770‑M2/135‑5 (MQ=255)
                                                                                                   cAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACAcaag                                                              >  2:851770‑M2/1‑131 (MQ=255)
                                                                                                    aaCTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAgg                                              >  2:1966048/1‑150 (MQ=255)
                                                                                                       tCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACAcaa                                                               <  2:2351845‑M2/130‑4 (MQ=255)
                                                                                                             cccAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GATCCATAGCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCa                                     <  1:1376602/150‑1 (MQ=38)
                                                                                                              ccAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAggg                                                                                                                                           >  2:1221291/1‑48 (MQ=255)
                                                                                                              ccAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAggg                                                                                                                                           <  1:1221291/48‑1 (MQ=255)
                                                                                                               cAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGt                                   >  2:2334257/1‑150 (MQ=255)
                                                                                                               cAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTATGCCGCGGAGCTGAGGACCTG‑GGGCCTCTTCGCGGCCCATTCCCGACACAAGGCCGTTGCCACAGAGGGCCCGGCCAGt                                   >  2:507941/1‑150 (MQ=37)
                                                                                                                 gagaTCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTg‑gg                                                                                           >  2:962844/1‑92 (MQ=255)
                                                                                                                 gagaTCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTg‑gg                                                                                           <  1:962844/92‑1 (MQ=255)
                                                                                                                   gaTCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCa                               <  1:1806810/150‑1 (MQ=255)
                                                                                                                      cacacaATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAgat                            <  1:1675418/150‑1 (MQ=255)
                                                                                                                       acacaATTCCTGCGGGAGCGGCCTTGcgtcgcgatagggccgcgaagcggccccaggtcttcagctccgccgcaaagatcgccggggccgctctgcggccctatc                                                                         <  2:1486390‑M1/105‑80 (MQ=255)
                                                                                                                       acacaATTCCTGCGGGAGCGGCCTTGcgtcgcgatagggccgcgaagcggccccaggtcttcagctccgccgcaaagatcgccggggccgctctgcggccctatc                                                                         >  1:1486390‑M1/1‑26 (MQ=255)
                                                                                                                       acacaATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAgatg                           >  1:2152887/1‑150 (MQ=255)
                                                                                                                        cacaATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAgatga                          <  2:1546879/150‑1 (MQ=255)
                                                                                                                        cacaATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAgatga                          <  2:2217839/150‑1 (MQ=255)
                                                                                                                         acaATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAgatgat                         >  2:2090894/1‑150 (MQ=255)
                                                                                                                          caATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGAtt                        <  1:1595014/150‑1 (MQ=255)
                                                                                                                           gaTTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACGAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGAttt                       >  1:2154073/2‑150 (MQ=255)
                                                                                                                           aaTTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGAttt                       <  2:14314/150‑1 (MQ=255)
                                                                                                                           aaTTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGAttt                       <  2:887242/150‑1 (MQ=255)
                                                                                                                             ttCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGc                                <  2:819890/139‑1 (MQ=255)
                                                                                                                             ttCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGc                                >  1:819890/1‑139 (MQ=255)
                                                                                                                             ttCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGc                     <  2:1816274/150‑1 (MQ=255)
                                                                                                                             ttCCCGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGc                     <  1:1002532/150‑1 (MQ=255)
                                                                                                                               ccTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGAACTTTGCGGCGGAGCTGAAGACCAG‑GGGCCGCTTCGCGCCCCATTCGGGACAAAAGGCCGGTCCCACAGAGGTCCGGGCCAGTTGCAGATGATTTTCCa                   >  1:1193741/1‑150 (MQ=38)
                                                                                                                                 tGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGt                 >  2:551708/1‑150 (MQ=255)
                                                                                                                                         cGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATG‑GTTGCCAGTCAGCCGAAc        <  2:115117/150‑1 (MQ=255)
                                                                                                                                            ccTTGtgtcgcgaatggggcgcgaagcggccccaggtcttcagctccgccgcaaagatcgccggggccgctctgcggccctatcgcgacgcaaggccgctcccgcaggaattgtgtgatctctgggaaatgagttgcgaaggctggcacc       >  2:2100339‑M1/1‑5 (MQ=255)
                                                                                                                                            ccTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGTCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCAATGATGACACAAGGGCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAg      >  1:1747759/1‑150 (MQ=255)
                                                                                                                                            ccTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCca                                                    <  1:1388281/104‑1 (MQ=255)
                                                                                                                                            ccTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCca                                                    >  2:1388281/1‑104 (MQ=255)
                                                                                                                                            ccTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGAttt                       >  2:1787476/1‑133 (MQ=255)
                                                                                                                                             cTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAgg     <  1:1093673/150‑1 (MQ=255)
                                                                                                                                              ttGtgtcgcgaatggggcgcgaagcggccccaggtcttcagctccgccgcaaagatcgccggggccgctctgcggccctatcgcgacgcaaggccgctcccgcaggaattgtgtgatctctgggaaatga                         >  1:2351845‑M1/1‑3 (MQ=255)
                                                                                                                                              ttGtgtcgcgaatggggcgcgaagcggccccaggtcttcagctccgccgcaaagatcgccggggccgctctgcggccctatcgcgacgcaaggccgctcccgcaggaattgtgtgatctctgggaaatga                         <  2:2351845‑M1/130‑128 (MQ=255)
                                                                                                                                              ttGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACAcaaggccgctcccgcaggaattgtgtgatctctgggaaatgagttgcgaaggctggcacctt    <  1:249940‑M2/150‑63 (MQ=255)
                                                                                                                                              ttGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACAcaaggccgctcccgcaggaatt                                            >  1:825573‑M2/1‑88 (MQ=255)
                                                                                                                                              ttGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGc    >  1:545576/1‑150 (MQ=255)
                                                                                                                                              ttGCGTCGCGATAGGGCAGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACAcaaggccgctcccgcaggaatt                                            <  2:825573‑M2/110‑23 (MQ=255)
                                                                                                                                                gtgtcgcgaatggggcgcgaagcggccccaggtcttcagctccgccgcaaagatcgccggggccgctctgcggccctatcgcgacgcaaggccgctcccgcaggaattgtgtgatctctgggaaatgagttgcgaaggctggcacctttg   <  1:1439831‑M1/150‑150 (MQ=255)
                                                                                                                                                gCGTCGCGATACGGCCGCAGAGCGGCCCCGGCGATCGAGGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTg  <  1:737224/150‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                      
AACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTG‑GGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTG  >  NC_002947/4960849‑4961142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.