| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5100019 | 54 (0.610) | 6 (0.090) | 6/196 | NT | 12.4% | intergenic (+57/+96) | PP_4488/phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | = 5100051 | 42 (0.600) | intergenic (+89/+64) | PP_4488/phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator | |||||
AAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5099850‑5100019‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgacacaaggccgctcccacagGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTTCCCCATCACGCGGTATTCGAGAATGTGCTTCTGGC < NC_002947/5100051‑5099907 AAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCG > 1:827692/1‑150 TGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACA < 1:1686113/150‑1 CCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACCTTCTCGACTCGGGCATTGTTGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCGCTGCGGGCTCCTATCGCGACACAA > 1:899607/1‑150 CCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAA > 1:909561/1‑150 aAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCA < 2:937330/149‑1 AGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACA < 1:463294/150‑1 GTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAA < 2:583505/133‑1 GTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAA > 1:583505/1‑133 ACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTG > 2:695424/1‑150 GGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTctaaaa < 1:695424/150‑7 CGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCC > 2:759183/1‑92 CGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCC < 1:759183/92‑1 AACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCC > 2:420118/1‑73 AACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCC < 1:420118/73‑1 TCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTG < 2:1453467/106‑1 TCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTG > 1:1453467/1‑106 TTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGT > 1:99937/1‑89 TTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGT < 2:99937/89‑1 CGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTAGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTTCCCCATCACGCGGTATTC > 2:82819/1‑150 GACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTGGGAGCAGCCGTTCCCCATCACGCGGTATTCG > 1:517755/1‑150 ACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGG > 1:2218192/1‑118 ACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGG < 2:2218192/118‑1 AAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAA < 1:2181427/101‑1 AAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAA > 2:2181427/1‑101 CCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTTCCCCATCACGCGGTATTCGAGAATGTGC < 2:1084342/150‑1 CGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTTCCCCATCACGCGGTATTCGAGAATGTGCT > 2:1905528/1‑150 CGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTTCCCCATCACGCG > 1:2051654/1‑133 CGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTTCCCCATCACGCG < 2:2051654/133‑1 CGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTTCCCCAGCACGCGGTATTCGAGAATGTGCT > 2:998481/1‑150 GCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTTCCCCATCACGCGGTATTCGAGAATGTGCTT > 2:1185908/1‑150 CTCCCACAGGGAATACGCTGTGCTCGGTTTGTGCGCTTTTTCGGTGGGAGCGGCCTTGTTTCGCGATAGGGGCCCGCAGGGCCTCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTTCCCCATCTCGCGGTATTCGAGAATGTTCTTC < 2:1697952/150‑1 TCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCGCCAACAGCCCCCGATTCCAAGGTATCAAACGTAGGAGCACCCGTTCCCCATCACGCGGCATTCGAGACTGTGCTTtt > 1:2339979/1‑148 CCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTTCCCCATCACGCGGTATTCGAGAATGTGCTTCTG > 2:909561/1‑150 CCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTTCCC > 2:887538/1‑119 CCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTTCCC < 1:887538/119‑1 CCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAG > 2:2202707/1‑92 CCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAG < 1:2202707/92‑1 CCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCACGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTTCCCCATCACGCGGTATTCGAGAATGTGCTTCTGG > 1:36897/1‑150 cagAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCATCCGTTGGAGCAGCCGTTCCCCATCACGCGGTATTCGAGAATGTGCTTCTGGC > 1:2406320/4‑150 ACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTT > 2:534255/1‑114 ACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTT < 1:534255/114‑1 AAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5099850‑5100019‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgacacaaggccgctcccacagGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGGCCCGCAGGGCCCCCGATTCCAAGGTATCAGCCGTTGGAGCAGCCGTTCCCCATCACGCGGTATTCGAGAATGTGCTTCTGGC < NC_002947/5100051‑5099907 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |