New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 510001954 (0.610)6 (0.090) 6/196 NT 12.4% intergenic (+57/+96) PP_4488/phhR hypothetical protein/sigma‑54 dependent transcriptional regulator
?NC_002947 = 5100051 42 (0.600)intergenic (+89/+64) PP_4488/phhR hypothetical protein/sigma‑54 dependent transcriptional regulator

Only 100 of 104 total aligned reads displayed.

CCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCC  >  NC_002947/5099902‑5100193
                                                                                                                                                      |                                                                                                                                              
ccAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTAc                                                                                                                                                >  1:143055/1‑150 (MQ=255)
cacgacaattgccaacaagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTAc                                                                                                                                                >  2:1777346‑M1/94‑150 (MQ=255)
     gCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGATGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctctg                                                                                                                                           >  1:2406320‑M2/1‑145 (MQ=255)
      ccAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGTGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgg                                                                                                                                          >  1:36897‑M2/1‑144 (MQ=255)
       cAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtggg                                                                                                                                         >  2:909561‑M2/1‑143 (MQ=255)
        aaaagcACAGTCTCGAATGCCGCGTGATGGGGAACGGGTGCTCCTACGTTTGATACCTTGGAATCGGGGGCTGTTGGCGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtggga                                                                                                                                        >  1:2339979‑M2/3‑142 (MQ=255)
         gaagaaCATTCTCGAATACCGCGAGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGAGGCCCTGCGGGCCCCTATCGCGAAACAAGGCCGCTCCCACCGAAAAAGCGCA‑CAAACCGAGCACAGCGTATTCCctgtgggag                                                                                                                                       <  2:1697952‑M2/150‑10 (MQ=255)
          aaGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgggagc                                                                                                                                      >  2:1185908‑M2/1‑140 (MQ=255)
           aGCACATTCTCGAATACCGCGTGCTGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgggagcg                                                                                                                                     >  2:998481‑M2/1‑139 (MQ=255)
           aGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgggagcg                                                                                                                                     >  2:1905528‑M2/1‑139 (MQ=255)
            gCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgggagcgg                                                                                                                                    <  2:1084342‑M2/150‑13 (MQ=255)
                aagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCtt                                                                                                                                >  2:2085362‑M1/78‑150 (MQ=255)
                     cGAATACCGCGTGATGGGGAACGGCTGCTCCCACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGGTAATACGCT‑GTGCTCTGGCTGAGCGCATTATctgtgggagcggccttgtgtc                                                                                                                           >  1:517755‑M2/1‑129 (MQ=255)
                      gAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCTACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgggagcggccttgtgtcg                                                                                                                          >  2:82819‑M2/1‑128 (MQ=255)
                            cgcgTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgggagcg                                                                                                                                     <  2:2051654‑M2/133‑12 (MQ=255)
                            cgcgTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgggagcg                                                                                                                                     >  1:2051654‑M2/1‑122 (MQ=255)
                            cgcgTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAg                                                                                                                    <  2:977278/150‑1 (MQ=255)
                             gcgTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAgg                                                                                                                   >  2:568097/1‑150 (MQ=255)
                                     gggAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgg                                                                                                                                          <  1:887538‑M2/119‑7 (MQ=255)
                                     gggAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgg                                                                                                                                          >  2:887538‑M2/1‑113 (MQ=255)
                                     gggAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGcgtt                                                                                                           <  2:1463285/150‑4 (MQ=255)
                                        aaCGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgt                                                                                                                                            <  1:534255‑M2/114‑5 (MQ=255)
                                        aaCGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgt                                                                                                                                            >  2:534255‑M2/1‑110 (MQ=255)
                                        aaCGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCa                                                                                                        <  1:1992131/150‑1 (MQ=255)
                                           tcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTAc                                                                                                                                                <  1:202202‑M1/57‑1 (MQ=255)
                                           tcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTAc                                                                                                                                                >  2:202202‑M1/51‑107 (MQ=255)
                                              tgctCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCa                                                                                                  >  1:744075/1‑150 (MQ=255)
                                               gctCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAg                                                                                                 <  2:405736/150‑1 (MQ=255)
                                                 tCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTAc                                                                                                                                                >  2:372274/1‑101 (MQ=255)
                                                 tCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTAc                                                                                                                                                <  1:372274/101‑1 (MQ=255)
                                                  ccAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgggagcggccttgt                                                                                                                              <  2:2218192‑M2/118‑19 (MQ=255)
                                                   cAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAATCCCAGGTTc                                                                                             >  2:1404180/1‑150 (MQ=255)
                                                   cAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAAAAAACTCCCACAGATCA‑CCGTTGCTTCTATGTCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTc                                                                                             >  1:1497784/1‑150 (MQ=255)
                                                    aaCGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCt                                                                                            >  1:556064/1‑150 (MQ=255)
                                                    aaCGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCATATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAATGCAAAGCAGTCGCAGGTTCt                                                                                            >  2:1044212/1‑150 (MQ=255)
                                                      cGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGTGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCttt                                                                                          <  1:2262985/150‑1 (MQ=255)
                                                      cGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCATATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCCAGGGTAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCttt                                                                                          <  1:1044212/150‑1 (MQ=255)
                                                        gCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGATGCTAAAGGACTGCAACGCAGTCCCAGGTTCTTTGa                                                                                        <  1:572267/150‑1 (MQ=255)
                                                         cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc                                                                                       <  1:1084342/150‑1 (MQ=255)
                                                         cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc                                                                                       <  2:1571193/150‑1 (MQ=255)
                                                         cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc                                                                                       <  1:568097/150‑1 (MQ=255)
                                                         cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc                                                                                       <  1:1448257/150‑1 (MQ=255)
                                                         cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc                                                                                       <  2:827692/150‑1 (MQ=255)
                                                          tGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAcc                                                                                      >  1:1086851/1‑150 (MQ=255)
                                                             tACCTTGGAAGCGGGGGCCCGGCGCGCCCATATCGCGACACAAGGCCGCTCCTACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTTTGGGAGCGGCCTTGTGTTGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACcaac                                                                                   <  1:199518/150‑1 (MQ=38)
                                                                cTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgg                                                                                                                                          <  1:2202707‑M2/92‑7 (MQ=255)
                                                                cTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgg                                                                                                                                          >  2:2202707‑M2/1‑86 (MQ=255)
                                                                aaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGc                                                                                                                                      <  1:75009‑M1/67‑1 (MQ=255)
                                                                aaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGc                                                                                                                                      >  2:75009‑M1/30‑96 (MQ=255)
                                                                 ttGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgggagcggcctt                                                                                                                                <  1:2181427‑M2/101‑17 (MQ=255)
                                                                 ttGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgggagcggcctt                                                                                                                                >  2:2181427‑M2/1‑85 (MQ=255)
                                                                     aaTCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATc                                                                           >  2:1293869/1‑150 (MQ=255)
                                                                          ggggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCt                                                                                            >  1:2348476/1‑128 (MQ=255)
                                                                          ggggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCt                                                                                            <  2:2348476/128‑1 (MQ=255)
                                                                          ggggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCC‑CAGCCCGAGCACAGCGAATTAGCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCACGGTCTTTGACCAACAACTAATccgccg                                                                      >  1:1926002/1‑150 (MQ=38)
                                                                            ggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc                                                                                       >  1:30385/1‑131 (MQ=255)
                                                                            ggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc                                                                                       <  2:30385/131‑1 (MQ=255)
                                                                               ccTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAc                                                                                                                 >  1:2140205/1‑102 (MQ=255)
                                                                               ccTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTg                                                                 <  2:1497784/150‑1 (MQ=255)
                                                                                cTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGt                                                                <  2:1274255/150‑1 (MQ=255)
                                                                                     ggCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGc                                                           >  1:82292/1‑150 (MQ=255)
                                                                                       ctccTATCGCGACACAAGGTCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGa                                                         <  2:899607/148‑1 (MQ=255)
                                                                                           tATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCttt                                                                                          <  2:329792/113‑1 (MQ=255)
                                                                                           tATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCttt                                                                                          >  1:329792/1‑113 (MQ=255)
                                                                                           tATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTaa                                                     >  2:52321/1‑150 (MQ=255)
                                                                                             TCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACcaacaa                                                                                 <  2:1477910‑M1/120‑1 (MQ=255)
                                                                                             TCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACcaacaa                                                                                 >  1:1477910‑M1/1‑120 (MQ=255)
                                                                                               GCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATccc                                                 <  1:466727‑M1/150‑1 (MQ=255)
                                                                                                 GACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTc                                               <  2:1364818‑M1/150‑1 (MQ=255)
                                                                                                 GACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTc                                               <  2:2121390‑M1/150‑1 (MQ=255)
                                                                                                    ACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAAc                                            <  1:2367240‑M1/150‑1 (MQ=255)
                                                                                                      AAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACtt                                          <  2:554803‑M1/150‑1 (MQ=255)
                                                                                                        GGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACttgt                                        <  2:276575‑M1/150‑1 (MQ=255)
                                                                                                         gaCGCTCCGACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACttgtt                                       <  1:477439‑M1/148‑1 (MQ=255)
                                                                                                         GCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCttt                                                                                          >  1:1041182‑M1/1‑99 (MQ=255)
                                                                                                         GCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCttt                                                                                          <  2:1041182‑M1/99‑1 (MQ=255)
                                                                                                         GCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACttgtt                                       >  2:655611‑M1/1‑150 (MQ=255)
                                                                                                            GCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGc                                    <  1:135815‑M1/150‑1 (MQ=255)
                                                                                                            GCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGc                                    <  2:923069‑M1/150‑1 (MQ=255)
                                                                                                                 cacaGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgggagcggccttgtgtcgcgataggggcccgcagggcccccgattccaaggtatcagccgttgga                                                                           >  1:1453467‑M2/1‑37 (MQ=255)
                                                                                                                 cacaGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgggagcggccttgtgtcgcgataggggcccgcagggcccccgattccaaggtatcagccgttgga                                                                           <  2:1453467‑M2/106‑70 (MQ=255)
                                                                                                                  ttttagaatgcgct‑CAGCCAGAGCACAGCGTATTACctgtgggagcggccttgtgtcgcgataggggcccgcagggcccccgattccaaggtatcagccgttggagcagccgttccccatcacgcggtattcgagaatgtgcttctggcc                              <  1:695424‑M2/144‑115 (MQ=255)
                                                                                                                  acaGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACctgtgggagcggccttgtgtcgcgataggggcccgcagggcccccgattccaa                                                                                           >  1:99937‑M2/1‑36 (MQ=255)
                                                                                                                  ACAGATAATGCGCT‑CAGCCAGAGCACAGCGTCTTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGt                              <  1:804139‑M1/150‑1 (MQ=255)
                                                                                                                  ACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGc                                                           >  2:1089522‑M1/1‑121 (MQ=255)
                                                                                                                  ACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGc                                                           >  2:1051626‑M1/1‑121 (MQ=255)
                                                                                                                  ACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGc                                                           <  1:1051626‑M1/121‑1 (MQ=255)
                                                                                                                  ACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGc                                                           <  1:1089522‑M1/121‑1 (MQ=255)
                                                                                                                  ACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCCATTGt                              <  1:2212501‑M1/150‑1 (MQ=255)
                                                                                                                    AGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCg                            <  2:1490567‑M1/150‑1 (MQ=255)
                                                                                                                      aTAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCgtg                          <  1:2121390/150‑1 (MQ=255)
                                                                                                                             gcT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGaaa                   >  1:645632/1‑150 (MQ=255)
                                                                                                                               t‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACttgttg                                      <  2:682055/129‑1 (MQ=255)
                                                                                                                               t‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACttgttg                                      >  1:682055/1‑129 (MQ=255)
                                                                                                                               t‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACttgttg                                      >  2:1506062/1‑129 (MQ=255)
                                                                                                                               t‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACttgttg                                      <  1:1506062/129‑1 (MQ=255)
                                                                                                                                  aGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAATCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACAcc               <  1:1404180/150‑1 (MQ=255)
                                                                                                                                    ccAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCa             <  1:52321/150‑1 (MQ=255)
                                                                                                                                     cAGAGCACAGCGTATTACctgtgggagcggccttgtgtcgcgataggggcccgcagggcccccgattccaaggtatcagccgttggagcagccgttccccatcacgcggtattcgagaatgtgcttctggccctgggagtcctcgtaggt            >  2:695424‑M2/1‑18 (MQ=255)
                                                                                                                                               cGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGccc  >  1:1821269/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                              
CCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCT‑CAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCC  >  NC_002947/5099902‑5100193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.