New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6050939 =	60 (0.680)	4 (0.050)	4/240	NT	6.4%	coding (1745/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase
	?	NC_002947	6050964 =	59 (0.680)					coding (1770/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase

TTCGACACGCAGTTCGACATTGAACTCGCCAGTGATGTCCTTGGCCCAGGAGAGTTGCACGCACTTTTCGGGGTTGTGGCGGATTTCACTGATGTTGCGGCAGTTCTCCAGGTGCACGACCATGCCCTTGCCGGCCGACAGGT‑GGCCGACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6051090‑6050939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaGGGCATGGTCGTGCACCTGGAG  >  NC_002947/6050964‑6050985                                                                                                                                                                                 TTCGACACGCAGTTCGACATTGAACTCGCCAGTGATGTCCTTGGCCCAGGAGAGTTGCACGCACTTTTCGGGGTTGTGGCGGATTTCACTGATGTTGCGGCAGTTCTCCAGGTGCACGACCATGCCCTTGCCGGCCGACAGGT‑GGCCGAC                          >  1:1848064/1‑150                                                             GCACTTTTCGGGGTTGTGGCGGATTTCACTGATGTTGCGGCAGTTCTCCAGGTGCACGACCATGCCCTTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTC              <  1:678436/102‑1                                                             GCACTTTTCGGGGTTGTGGCGGATTTCACTGATGTTGCGGCAGTTCTCCAGGTGCACGACCATGCCCTTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTC              >  2:678436/1‑102                                                                               GCGGATTTCACTGATGTTGCGGCAGTTCTCCAGGTGCACGACCATGCCCTTGTCGGCCACCTGTC‑GGCCGGCAAGGGCATGGTCGTGCACCTGGAG  <  1:1738537/96‑1                                                                               GCGGATTTCACTGATGTTGCGGCAGTTCTCCAGGTGCACGACCATGCCCTTGTCGGCCACCTGTC‑GGCCGGCAAGGGCATGGTCGTGCACCTGGAG  >  2:1738537/1‑96                                                                                                                                                                                 TTCGACACGCAGTTCGACATTGAACTCGCCAGTGATGTCCTTGGCCCAGGAGAGTTGCACGCACTTTTCGGGGTTGTGGCGGATTTCACTGATGTTGCGGCAGTTCTCCAGGTGCACGACCATGCCCTTGCCGGCCGACAGGT‑GGCCGACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6051090‑6050939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaGGGCATGGTCGTGCACCTGGAG  >  NC_002947/6050964‑6050985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.