New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6050939 =	60 (0.680)	4 (0.050)	4/240	NT	6.4%	coding (1745/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase
	?	NC_002947	6050964 =	59 (0.680)					coding (1770/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase

CGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACTGCGTGTCGAACTGGAACACCAGCGCGGGC  >  NC_002947/6050815‑6051109                                                                                                                                                       |                                                                                                                                                  cgccgcCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAg                                                                                                                                                   <  2:715939/150‑1 (MQ=255)  gccgccTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAgg                                                                                                                                                  >  1:1103183/1‑150 (MQ=255)    cgccTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGc                                                                                                                                                <  2:1103183/150‑1 (MQ=255)       ctgctgTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATg                                                                                                                                             <  1:214841/150‑1 (MQ=255)          ctgTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTc                                                                                                                                          <  2:1878958/150‑1 (MQ=255)           tgTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCg                                                                                                                                         >  1:406990/1‑150 (MQ=255)                  cGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCt                                                                                                                                  <  1:1124764/150‑1 (MQ=255)                       gCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCCGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGCCGTGCACCtccaga                                                                                                                             >  2:344805/1‑145 (MQ=255)                           aCAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTg                                                                                                                         >  2:2227096/1‑150 (MQ=255)                                 gCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCaa                                                                                                                   <  1:236976/150‑1 (MQ=255)                                      cgcCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCa                                                                                                              <  1:39050/150‑1 (MQ=255)                                      cgcCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCAAGCCCAAGCCTCAGGACCCGATTCAGGTCC‑TCCTGTCGTCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCa                                                                                                              <  1:1498344/150‑1 (MQ=255)                                        ccAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGt                                                                                                            >  2:1848064/1‑150 (MQ=255)                                        ccAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGt                                                                                                            <  1:2227096/150‑1 (MQ=255)                                        ccAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGt                                                                                                            <  1:344805/150‑1 (MQ=255)                                         cAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGgaga                                                                                                                             >  1:827379/1‑132 (MQ=255)                                         cAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGgaga                                                                                                                             <  2:827379/132‑1 (MQ=255)                                           gAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGaa                                                                                                         <  2:381890/150‑1 (MQ=255)                                           gAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGaa                                                                                                         >  2:556521/1‑150 (MQ=255)                                            aaGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGaaa                                                                                                        <  2:1781617/150‑1 (MQ=255)                                                       gCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAAc                                                                                             >  2:1910701/1‑150 (MQ=255)                                                         gATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAAccc                                                                                           <  2:1632081/150‑1 (MQ=255)                                                           gcacttttcggggttgtggcggatttcactgatgttgcggcagttctccaggtgcacgaccatgcccttgtcggccacctgtcggccggcaaGGGCATGGTc                                                                                                                                          >  2:678436‑M2/93‑102 (MQ=255)                                                           gcacttttcggggttgtggcggatttcactgatgttgcggcagttctccaggtgcacgaccatgcccttgtcggccacctgtcggccggcaaGGGCATGGTc                                                                                                                                          <  1:678436‑M2/10‑1 (MQ=255)                                                                 gCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAgt                                                                                   <  2:1161380/150‑1 (MQ=255)                                                                  cACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAgtg                                                                                  >  2:840745/1‑150 (MQ=255)                                                                    ccGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGt                                                                                                                                        <  1:1877394/94‑1 (MQ=255)                                                                    ccGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGt                                                                                                                                        >  2:1877394/1‑94 (MQ=255)                                                                     cGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGc                                                                                                                     >  2:2058474/1‑112 (MQ=255)                                                                     cGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGc                                                                                                                     <  1:2058474/112‑1 (MQ=255)                                                                       aaGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAAc                                                                                                                  <  1:574519/113‑1 (MQ=255)                                                                       aaGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAAc                                                                                                                  >  2:574519/1‑113 (MQ=255)                                                                       aaGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAgtgcgtgc                                                                             >  1:2078212/1‑150 (MQ=255)                                                                          gCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGCAACGTGCGTGCacc                                                                          >  2:1532965/1‑148 (MQ=255)                                                                            cTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGt                                                                                                            >  2:217307/1‑114 (MQ=255)                                                                            cTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGt                                                                                                            <  1:217307/114‑1 (MQ=255)                                                                             gcggatttcactgatgttgcggcagttctccaggtgcacgaccatgcccttgtcggccacctgtcggccggcaaGGGCATGGTCGTGCACCTGgag                                                                                                                              >  2:1738537‑M2/75‑96 (MQ=255)                                                                             gcggatttcactgatgttgcggcagttctccaggtgcacgaccatgcccttgtcggccacctgtcggccggcaaGGGCATGGTCGTGCACCTGgag                                                                                                                              <  1:1738537‑M2/22‑1 (MQ=255)                                                                                   tCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCa                                                                                                              <  2:1213893/105‑1 (MQ=255)                                                                                   tCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCa                                                                                                              >  1:1213893/1‑105 (MQ=255)                                                                                   tCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTcc                                                                     <  2:358670/146‑1 (MQ=255)                                                                                   tCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTcc                                                                     >  1:358670/1‑146 (MQ=255)                                                                                      gCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGc                                                                                                   <  2:1606178/113‑1 (MQ=255)                                                                                      gCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGc                                                                                                   >  1:1606178/1‑113 (MQ=255)                                                                                        tACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAg                                                            <  1:913763/150‑1 (MQ=255)                                                                                           gCCAGGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGAc                                                         >  1:2252554/1‑150 (MQ=255)                                                                                            ccAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACa                                                        >  1:2012271/1‑150 (MQ=255)                                                                                                    tgcACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGc                                                >  1:861736/1‑150 (MQ=255)                                                                                                    tgcACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGc                                                >  1:2324456/1‑150 (MQ=255)                                                                                                      cACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGa                                              <  2:861736/150‑1 (MQ=255)                                                                                                       ctccaggtgcacgaccatgcccTTGCCGGCC‑GACAGGTGGCCGACAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGc                                                                                                   <  1:1738537‑M1/74‑1 (MQ=255)                                                                                                       ctccaggtgcacgaccatgcccTTGCCGGCC‑GACAGGTGGCCGACAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGc                                                                                                   >  2:1738537‑M1/23‑96 (MQ=255)                                                                                                             aTCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAAt                                       <  2:1437171/150‑1 (MQ=255)                                                                                                             aTCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAAAATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGCGCCAAGGACATCACTGGCGAGttaact                                       <  2:406990/150‑5 (MQ=255)                                                                                                                   gaccatgcccTTGCCGGCCGACAGGT‑GGCCGACAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAgtgc                                                                                 <  1:678436‑M1/92‑1 (MQ=255)                                                                                                                   gaccatgcccTTGCCGGCCGACAGGT‑GGCCGACAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAgtgc                                                                                 >  2:678436‑M1/11‑102 (MQ=255)                                                                                                                     tGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACt                               <  2:2252554/150‑1 (MQ=255)                                                                                                                       aCCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACTGc                             <  1:840745/150‑1 (MQ=255)                                                                                                                         ccGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGt                                                                                                            <  1:671843/69‑1 (MQ=255)                                                                                                                         ccGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGt                                                                                                            >  2:671843/1‑69 (MQ=255)                                                                                                                         ccGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGc                                                                                                   >  1:1888364/1‑78 (MQ=255)                                                                                                                         ccGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGc                                                                                                   <  2:1888364/78‑1 (MQ=255)                                                                                                                         ccGATTGTCGGCC‑ACCGGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACTGCgt                           <  2:2242969/150‑1 (MQ=255)                                                                                                                               GTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACTGCGTGTCGaa                     >  1:1848064‑M1/1‑150 (MQ=255)                                                                                                                                  ggCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACTGCGTGTCGAACTg                  >  2:2013494/1‑150 (MQ=255)                                                                                                                                     c‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGaaaa                                                                                     <  1:1840540/80‑1 (MQ=255)                                                                                                                                     c‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGaaaa                                                                                     >  2:1840540/1‑80 (MQ=255)                                                                                                                                       aCCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGtt                                           <  2:2303013/121‑1 (MQ=255)                                                                                                                                       aCCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTAGGCCAAGGACATCACTGGCGAGtt                                           >  1:2303013/1‑121 (MQ=255)                                                                                                                                           gTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACTGCGTGTCGAACTGGa                >  2:1681543/1‑144 (MQ=255)                                                                                                                                           gTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACTGCGTGTCGAACTGGa                <  1:1681543/144‑1 (MQ=255)                                                                                                                                                  ggcAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACTGCGTGTCGAACTGGAACACCAGCGCggg   <  2:2078212/150‑1 (MQ=255)                                                                                                                                                   gcAAGGGAACAGTCGTGCACCTGGAGAACTGCCGCAACCTCAGTGAAAGCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACTGCGTGTCGAACTGGAACACCAGCGCGGGc  <  1:1910701/150‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                  CGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACTGCGTGTCGAACTGGAACACCAGCGCGGGC  >  NC_002947/6050815‑6051109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.