New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6050939 =	60 (0.680)	4 (0.050)	4/240	NT	6.4%	coding (1745/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase
	?	NC_002947	6050964 =	59 (0.680)					coding (1770/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase

AACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACTGCGT  >  NC_002947/6050791‑6051084                                                                                                                                                     |                                                                                                                                                   aaCCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGAtt                                                                                                                                                   <  1:414568/150‑1 (MQ=255)     gCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCg                                                                                                                                               >  2:214841/1‑150 (MQ=255)       aTGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGc                                                                                                                                             >  1:1781617/1‑150 (MQ=255)            cTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGCCGGccgaca                                                                                                                                        <  1:1556039/150‑5 (MQ=255)                   gTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTcggcc                                                                                                                                >  1:472436/1‑150 (MQ=255)                   gTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTcggcc                                                                                                                                <  2:472436/150‑1 (MQ=255)                        gcgcCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCaa                                                                                                                           <  2:1501679/150‑1 (MQ=255)                         cgccgcCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAg                                                                                                                          <  2:715939/150‑1 (MQ=255)                          gccgccTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAgg                                                                                                                         >  1:1103183/1‑150 (MQ=255)                            cgccTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGc                                                                                                                       <  2:1103183/150‑1 (MQ=255)                               ctgctgTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATg                                                                                                                    <  1:214841/150‑1 (MQ=255)                                  ctgTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTc                                                                                                                 <  2:1878958/150‑1 (MQ=255)                                   tgTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCg                                                                                                                >  1:406990/1‑150 (MQ=255)                                     tCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCaa                                                                                                                           >  2:441476/1‑137 (MQ=255)                                     tCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCaa                                                                                                                           <  1:441476/137‑1 (MQ=255)                                          cGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCt                                                                                                         <  1:1124764/150‑1 (MQ=255)                                               gCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTc                                                                                                                                                >  2:236286/1‑107 (MQ=255)                                               gCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTc                                                                                                                                                <  1:236286/107‑1 (MQ=255)                                               gCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCCGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGCCGTGCACCtccaga                                                                                                    >  2:344805/1‑145 (MQ=255)                                                   aCAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTg                                                                                                >  2:2227096/1‑150 (MQ=255)                                                       cTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTc                                                                                                                                                <  2:1862144/99‑1 (MQ=255)                                                       cTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTc                                                                                                                                                >  1:1862144/1‑99 (MQ=255)                                                         gCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCaa                                                                                          <  1:236976/150‑1 (MQ=255)                                                              cgcCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCa                                                                                     <  1:39050/150‑1 (MQ=255)                                                              cgcCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCAAGCCCAAGCCTCAGGACCCGATTCAGGTCC‑TCCTGTCGTCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCa                                                                                     <  1:1498344/150‑1 (MQ=255)                                                                ccAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGt                                                                                   <  1:344805/150‑1 (MQ=255)                                                                ccAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGt                                                                                   <  1:2227096/150‑1 (MQ=255)                                                                ccAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGt                                                                                   >  2:1848064/1‑150 (MQ=255)                                                                 cAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGgaga                                                                                                    >  1:827379/1‑132 (MQ=255)                                                                 cAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGgaga                                                                                                    <  2:827379/132‑1 (MQ=255)                                                                   gAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGaa                                                                                <  2:381890/150‑1 (MQ=255)                                                                   gAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGaa                                                                                >  2:556521/1‑150 (MQ=255)                                                                    aaGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGaaa                                                                               <  2:1781617/150‑1 (MQ=255)                                                                          cACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTc                                                                                                                                                >  1:2190159/1‑80 (MQ=255)                                                                          cACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTc                                                                                                                                                <  2:2190159/80‑1 (MQ=255)                                                                               gCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAAc                                                                    >  2:1910701/1‑150 (MQ=255)                                                                                 gATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAAccc                                                                  <  2:1632081/150‑1 (MQ=255)                                                                                         gCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAgt                                                          <  2:1161380/150‑1 (MQ=255)                                                                                          cACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAgtg                                                         >  2:840745/1‑150 (MQ=255)                                                                                            ccGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGt                                                                                                               <  1:1877394/94‑1 (MQ=255)                                                                                            ccGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGt                                                                                                               >  2:1877394/1‑94 (MQ=255)                                                                                             cGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTc                                                                                                                                    <  1:1998457/72‑1 (MQ=255)                                                                                             cGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTc                                                                                                                                    >  2:1998457/1‑72 (MQ=255)                                                                                             cGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGc                                                                                            <  1:2058474/112‑1 (MQ=255)                                                                                             cGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGc                                                                                            >  2:2058474/1‑112 (MQ=255)                                                                                               aaGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAAc                                                                                         >  2:574519/1‑113 (MQ=255)                                                                                               aaGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAAc                                                                                         <  1:574519/113‑1 (MQ=255)                                                                                               aaGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAgtgcgtgc                                                    >  1:2078212/1‑150 (MQ=255)                                                                                                  gCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGCAACGTGCGTGCacc                                                 >  2:1532965/1‑148 (MQ=255)                                                                                                    cTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGt                                                                                   <  1:217307/114‑1 (MQ=255)                                                                                                    cTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGt                                                                                   >  2:217307/1‑114 (MQ=255)                                                                                                           tCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCa                                                                                     <  2:1213893/105‑1 (MQ=255)                                                                                                           tCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCa                                                                                     >  1:1213893/1‑105 (MQ=255)                                                                                                           tCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTcc                                            >  1:358670/1‑146 (MQ=255)                                                                                                           tCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTcc                                            <  2:358670/146‑1 (MQ=255)                                                                                                              gCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGc                                                                          <  2:1606178/113‑1 (MQ=255)                                                                                                              gCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGc                                                                          >  1:1606178/1‑113 (MQ=255)                                                                                                                tACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAg                                   <  1:913763/150‑1 (MQ=255)                                                                                                                   gCCAGGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGAc                                >  1:2252554/1‑150 (MQ=255)                                                                                                                    ccAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACa                               >  1:2012271/1‑150 (MQ=255)                                                                                                                            tgcACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGc                       >  1:861736/1‑150 (MQ=255)                                                                                                                            tgcACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGc                       >  1:2324456/1‑150 (MQ=255)                                                                                                                              cACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGa                     <  2:861736/150‑1 (MQ=255)                                                                                                                               ctccaggtgcacgaccatgcccTTGCCGGCC‑GACAGGTGGCCGACAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGc                                                                          >  2:1738537‑M1/23‑96 (MQ=255)                                                                                                                               ctccaggtgcacgaccatgcccTTGCCGGCC‑GACAGGTGGCCGACAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGc                                                                          <  1:1738537‑M1/74‑1 (MQ=255)                                                                                                                                     aTCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAAt              <  2:1437171/150‑1 (MQ=255)                                                                                                                                     aTCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAAAATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGCGCCAAGGACATCACTGGCGAGttaact              <  2:406990/150‑5 (MQ=255)                                                                                                                                           gaccatgcccTTGCCGGCCGACAGGT‑GGCCGACAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAgtgc                                                        <  1:678436‑M1/92‑1 (MQ=255)                                                                                                                                           gaccatgcccTTGCCGGCCGACAGGT‑GGCCGACAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAgtgc                                                        >  2:678436‑M1/11‑102 (MQ=255)                                                                                                                                             tGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACt      <  2:2252554/150‑1 (MQ=255)                                                                                                                                               aCCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACTGc    <  1:840745/150‑1 (MQ=255)                                                                                                                                                 ccGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGt                                                                                   >  2:671843/1‑69 (MQ=255)                                                                                                                                                 ccGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGt                                                                                   <  1:671843/69‑1 (MQ=255)                                                                                                                                                 ccGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGc                                                                          >  1:1888364/1‑78 (MQ=255)                                                                                                                                                 ccGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGc                                                                          <  2:1888364/78‑1 (MQ=255)                                                                                                                                                 ccGATTGTCGGCC‑ACCGGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACTGCgt  <  2:2242969/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   AACCGCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAACAGCTGCCGGCGCCAGAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCC‑ACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGTGAAATCCGCCACAACCCCGAAAAGTGCGTGCAACTCTCCTGGGCCAAGGACATCACTGGCGAGTTCAATGTCGAACTGCGT  >  NC_002947/6050791‑6051084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.