New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3522813	12 (0.700)	4 (0.240)	4/272	1.6	32.3%	intergenic (+557/‑140)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	= 3522862	5 (0.300)					intergenic (+606/‑91)	PP_5584/PP_3113	hypothetical protein/transposase

ATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3522730‑3522813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATC  <  NC_002947/3522862‑3522814                                                                                                                                       ATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGC     <  1:222428/130‑1 ATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGC     >  2:222428/1‑130                  CCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATC  <  1:255814/116‑1                  CCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATC  >  2:255814/1‑116                                                                                                                                       ATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3522730‑3522813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATC  <  NC_002947/3522862‑3522814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.