New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3522813	12 (0.700)	4 (0.240)	4/272	1.6	32.3%	intergenic (+557/‑140)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	= 3522862	5 (0.300)					intergenic (+606/‑91)	PP_5584/PP_3113	hypothetical protein/transposase

GCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCT  >  NC_002947/3522666‑3522938                                                                                                                                                    |                                                                                                                              gCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCAGTGCCAGCGTTTCGGTCACCTGCATATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGa                                                                                                                             <  1:336358/150‑1 (MQ=255)       cGGTGAGGTAGGGCAGCGGGTCCGGTATGGGCCGTGCCAGCTCTTCAGCCACCAGCACATGTTCAAAGTGCTGTCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGGGCGTTGGTCACTACGCACATGCCGATGCCAt                                                                                                                       >  1:68331/1‑150 (MQ=255)               tAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTgg                                                                                                               <  2:185622/150‑1 (MQ=255)                             cGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCcagcag                                                                                                 <  2:376955/150‑1 (MQ=255)                                           ccAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTg                                                                                   >  2:108640/1‑150 (MQ=255)                                                tctTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCAtt                                                                              <  1:108640/150‑1 (MQ=255)                                                      gCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCg                                                                        >  2:370601/1‑150 (MQ=255)                                                             gCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAgcgc                                                                 >  1:160183/1‑150 (MQ=255)                                                                 aTGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCaatgccaggcctgttgcgcctgctggagcatgcccaggcccatggc                                                                                 <  1:222428‑M1/130‑47 (MQ=255)                                                                 aTGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCaatgccaggcctgttgcgcctgctggagcatgcccaggcccatggc                                                                                 >  2:222428‑M1/1‑84 (MQ=255)                                                                                  ccaggcccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCaatgccaggcctgttgcgcctgctggagcatgcccaggcccatggcatc                                                                              <  1:255814‑M1/116‑50 (MQ=255)                                                                                  ccaggcccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCaatgccaggcctgttgcgcctgctggagcatgcccaggcccatggcatc                                                                              >  2:255814‑M1/1‑67 (MQ=255)                                                                                   caggcccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCGGCGGTGCGTTGGTCACCACGCACATGCCGATg                                                                                                                           >  1:170816/1‑70 (MQ=255)                                                                                   caggcccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATg                                                                                                                           <  2:170816/70‑1 (MQ=255)                                                                                                                  ttCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCg            >  1:148490/1‑150 (MQ=255)                                                                                                                            gTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATttctttct  <  2:148490/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                              GCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCT  >  NC_002947/3522666‑3522938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.