| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3522813 | 12 (0.700) | 4 (0.240) | 4/272 | 1.6 | 32.3% | intergenic (+557/‑140) | PP_5584/PP_3113 | hypothetical protein/transposase |
| ? | NC_002947 | = 3522862 | 5 (0.300) | intergenic (+606/‑91) | PP_5584/PP_3113 | hypothetical protein/transposase | |||||
TCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGCCCGTC > NC_002947/3522713‑3523006 | tctTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCAtt < 1:108640/150‑1 (MQ=255) gCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCg > 2:370601/1‑150 (MQ=255) gCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAgcgc > 1:160183/1‑150 (MQ=255) ttCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCg > 1:148490/1‑150 (MQ=255) gTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATttctttct < 2:148490/150‑1 (MQ=255) gATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgg < 1:255814‑M2/116‑68 (MQ=255) gATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgg > 2:255814‑M2/1‑49 (MQ=255) gCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgggccagcactttgaacat < 1:222428‑M2/130‑85 (MQ=255) gCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgggccagcactttgaacat > 2:222428‑M2/1‑46 (MQ=255) ggCGTTGGCGCGTAAGCGCCCCATCACCCCCACATTCAAAGCGCTTACCTGATCCCCGATGCGGTGCTCGCGATGTCTTTGTGGAGCCCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGCCCGTc < 2:78941/150‑1 (MQ=11) | TCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGCCCGTC > NC_002947/3522713‑3523006 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |