New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5033278	2 (0.120)	5 (0.300)	5/266	1.4	37.2%	intergenic (+395/‑15)	PP_4435/PP_4437	hypothetical protein/transposase
	?	NC_002947	6155309 =	15 (0.910)					intergenic (‑63/+143)	PP_5398/PP_5399	transposase/hypothetical protein

TGGACTGGCAAAAACCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5033132‑5033278 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccttaATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAG  >  NC_002947/6155309‑6155376                                                                                                                                                                                                                         gGGACTCGCAAAAGCCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATG                                                                   <  2:143220/149‑1                                                                       CGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAC                                                                           >  1:259531/1‑72                                                                       CGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAC                                                                           <  2:259531/72‑1                                                                                                      AGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTAT                       >  1:308064/1‑93                                                                                                      AGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTAT                       <  2:308064/93‑1                                                                                                        GGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAG  >  1:224353/1‑112                                                                                                        GGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAG  <  2:224353/112‑1                                                                                                                                                                                                                         TGGACTGGCAAAAACCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5033132‑5033278 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccttaATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAG  >  NC_002947/6155309‑6155376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.