New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5033278	2 (0.120)	5 (0.300)	5/266	1.4	37.2%	intergenic (+395/‑15)	PP_4435/PP_4437	hypothetical protein/transposase
	?	NC_002947	6155309 =	15 (0.910)					intergenic (‑63/+143)	PP_5398/PP_5399	transposase/hypothetical protein

TGGACTGGCAAAAACCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTCGTTCAGGAA  >  NC_002947/5033132‑5033346                                                                                                                                                   |                                                                     gggaCTCGCAAAAGCCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAatg                                                                   <  2:143220‑M1/149‑4 (MQ=255)                                                      tCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAg              >  1:346559/1‑150 (MQ=35)                                                            tCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTNTNTGCGCCNACGAAGCTCTTANCCGAAACCGTTCAAAGCCCAGGTCNtt        <  1:226029/150‑1 (MQ=11)                                                                                                      aGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAatgctggagttcggaaggtgagttccccggacgcttactcgctgtat                       >  1:308064‑M1/1‑46 (MQ=255)                                                                                                      aGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAatgctggagttcggaaggtgagttccccggacgcttactcgctgtat                       <  2:308064‑M1/93‑48 (MQ=255)                                                                                                        ggCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAatgctggagttcggaaggtgagttccccggacgcttactcgctgtatgcgttcgagacgggagcagag  >  1:224353‑M1/1‑44 (MQ=255)                                                                                                        ggCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAatgctggagttcggaaggtgagttccccggacgcttactcgctgtatgcgttcgagacgggagcagag  <  2:224353‑M1/112‑69 (MQ=255)                                                                                                                                                   |                                                                     TGGACTGGCAAAAACCGGGGTCGTTGGAACGCTCGTTGGACGCTCGCCAGGAATCACCATCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTCGTTCAGGAA  >  NC_002947/5033132‑5033346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.