New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5033278	2 (0.120)	5 (0.300)	5/266	1.4	37.2%	intergenic (+395/‑15)	PP_4435/PP_4437	hypothetical protein/transposase
	?	NC_002947	6155309 =	15 (0.910)					intergenic (‑63/+143)	PP_5398/PP_5399	transposase/hypothetical protein

CACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTT  >  NC_002947/6155162‑6155426                                                                                                                                                    |                                                                                                                      gggactcgcaaaagccggggtcgttggaacgctcgttggacgctcgccaggaatcaccatcgtaagcgtccggcgaactcaccttccgaactccagcattaagggcgatggtgtccgcttaaaaatacgcggacaccatcgcccttaATg                                                                                                                     <  2:143220‑M2/3‑1 (MQ=255)                                          aCCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTg                                                                            <  1:53712/150‑1 (MQ=34)                                             tGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTAt                                                                         >  1:110738/1‑150 (MQ=37)                                             tGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGCACGCTTTCTCGTTGttt                                                                         <  2:397351/150‑3 (MQ=12)                                                                             ttGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGa                                                          <  1:391663/133‑1 (MQ=255)                                                                             ttGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGa                                                          >  2:391663/1‑133 (MQ=255)                                                                                                  aaTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTAt                                                                         >  2:74514/1‑97 (MQ=40)                                                                                                  aaTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTAt                                                                         <  1:74514/97‑1 (MQ=40)                                                                                                    tAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGt                                                >  1:278278/1‑120 (MQ=255)                                                                                                    tAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGt                                                <  2:278278/120‑1 (MQ=255)                                                                                                      agggcgatggtgtccgcgtatttttaagcggacgcgatcacccttaATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTAt                                                                         >  1:308064‑M2/47‑93 (MQ=255)                                                                                                      agggcgatggtgtccgcgtatttttaagcggacgcgatcacccttaATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTAt                                                                         <  2:308064‑M2/47‑1 (MQ=255)                                                                                                        ggcgatggtgtccgcgtatttttaagcggacgcgatcacccttaATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCagag                                                    >  1:224353‑M2/45‑112 (MQ=255)                                                                                                        ggcgatggtgtccgcgtatttttaagcggacgcgatcacccttaATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCagag                                                    <  2:224353‑M2/68‑1 (MQ=255)                                                                                                            aTCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTg          <  2:248733/150‑1 (MQ=255)                                                                                                              cgcgTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCa        >  1:170707/1‑150 (MQ=255)                                                                                                                 gTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGAGTTCGAGACGGGAGCAGAGTTGTACTTTCTCGACGCATGGAAATCAGGTGCGGAAGTACTGCAGaa     >  2:127357/1‑150 (MQ=255)                                                                                                                    cGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAAttt  >  1:327382/1‑150 (MQ=255)                                                                                                                       ttAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTgag                   >  1:228364/1‑128 (MQ=255)                                                                                                                       ttAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCg                   <  2:228364/130‑1 (MQ=255)                                                                                                                                                    |                                                                                                                      CACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTT  >  NC_002947/6155162‑6155426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.