New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1621292 =	13 (0.760)	4 (0.250)	4/258	1.6	24.2%	coding (164/1392 nt)	PP_1421	sensor histidine kinase TctE
	?	NC_002947	1621329 =	13 (0.820)					coding (201/1392 nt)	PP_1421	sensor histidine kinase TctE

AGGTTCTCGTAGCCAGAAATCAGCCTCTGCTTGATATCCAGCACCTGATAGTAAATGCGCCCCGCACTGTCATAGGCAAACGTGTCCAGCGCCACGTAAGGCACATCCGCGCTCAACGAACCATCGCGCTGCGACAGGCCCGCGGCGATGGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1621445‑1621292 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgatggttcGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTG  >  NC_002947/1621329‑1621407                                                                                                                                                                                                                                           AGGTTCTCGTAGCCAGAAATAAGCCTCTGCTTGATATCCAGCACCTGATAGTAAATGCGCCCCGCACTGTCATAGGCAAACGTGACCAGCGCCACGTAAGGCACATCCGCGCTCAACGAACCATCGCGCTGCGACAGGCCCGCGGCGATG                                                                                     <  2:84631/150‑1                                                                                                                         CCATCGCGCTGCGACAGGCCCGCGGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTAT           >  1:225416/1‑104                                                                                                                         CCATCGCGCTGCGACAGGCCCGCGGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTAT           <  2:225416/104‑1                                                                                                                          CATCGCGCTGCGACAGGCCCGCGGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTG  >  1:228083/1‑112                                                                                                                          CATCGCGCTGCGACAGGCCCGCGGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTG  <  2:228083/112‑1                                                                                                                                                                                                                                           AGGTTCTCGTAGCCAGAAATCAGCCTCTGCTTGATATCCAGCACCTGATAGTAAATGCGCCCCGCACTGTCATAGGCAAACGTGTCCAGCGCCACGTAAGGCACATCCGCGCTCAACGAACCATCGCGCTGCGACAGGCCCGCGGCGATGGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1621445‑1621292 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgatggttcGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTG  >  NC_002947/1621329‑1621407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.