New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1621292 =	13 (0.760)	4 (0.250)	4/258	1.6	24.2%	coding (164/1392 nt)	PP_1421	sensor histidine kinase TctE
	?	NC_002947	1621329 =	13 (0.820)					coding (201/1392 nt)	PP_1421	sensor histidine kinase TctE

GCTGGGTAATTTGGCGCTGTTGCTGGTGGTGCTGATGCTGGCCAGCGGCCTTAGCGCCTACTGGAATGGCCGCGAGGCCGCCGACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTGGATATCAAGCAGAGGCT  >  NC_002947/1621173‑1621424                                                                                                                        |                                                                                                                                     gCTGGGTAATTTGGCGCTGTTGCTGGTGGTGCTGATGCTGGCCAGACATGGCGCCGCCGTCTGGAATGGCCGCGAGGCCGCCGACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGa                                                                                                        <  2:218689/150‑1 (MQ=255)       tAATTTGGCGCTGTTGCTGGTGGTGCTGATGCTGGCCAGCGGCCTTAGCGCCTACTGGAATGGCCGCGAGGCCGCCGACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTc                                                                                                  <  1:67352/150‑1 (MQ=255)       tAATTTGGCGCTGGTGCTGGTGGTGCTGATGCTGGCCAGCGGCCTTAGCGCCTCCTGGCGCGAGGTCAACCCCGCCGACACTGCCTACGACCGCAACCTGCTGGATTAGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTc                                                                                                  <  1:400493/150‑1 (MQ=255)                                   aTGCTGGCCAGCGGCCTTAGCGCCTACTGGAATGGCCGCGAGGCCGCCGACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGgcg                                                                      >  2:91160/1‑150 (MQ=255)                                         cagcacctgatagtaaatgcgccccgcactgtcataggcaaacgtgtccagcgccacgtaaggcacatccgcgctcaacGAACCATCGCCGCGGGCCTGTCGCAGCGCGATg                                                                                                      >  1:228083‑M1/80‑112 (MQ=255)                                         cagcacctgatagtaaatgcgccccgcactgtcataggcaaacgtgtccagcgccacgtaaggcacatccgcgctcaacGAACCATCGCCGCGGGCCTGTCGCAGCGCGATg                                                                                                      <  2:228083‑M1/33‑1 (MQ=255)                                                  atagtaaatgcgccccgcactgtcataggcaaacgtgtccagcgccacgtaaggcacatccgcgctcaacGAACCATCGCCGCGGGCCTGTCGCAGCGCGATgg                                                                                                     <  2:225416‑M1/34‑1 (MQ=255)                                                  atagtaaatgcgccccgcactgtcataggcaaacgtgtccagcgccacgtaaggcacatccgcgctcaacGAACCATCGCCGCGGGCCTGTCGCAGCGCGATgg                                                                                                     >  1:225416‑M1/71‑104 (MQ=255)                                                              tGGAATGGCCGCGAGGCCGCCGACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCg                                           >  2:182100/1‑150 (MQ=255)                                                                gAATGGCCGCGAGGCCGCCGACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCggg                                         <  1:91160/150‑1 (MQ=255)                                                                              ccgcagACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGGTGGTGCGTTGAGAGCGGATGTGCGTGACGGGGCGGGTGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATc                           >  1:399321/1‑150 (MQ=255)                                                                                 ccgACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGCTGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCGCGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCacg                        >  2:47377/1‑148 (MQ=255)                                                                                        tGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTGGa                 >  1:276886/1‑150 (MQ=255)                                                                                          ccTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTGGata               <  1:227013/150‑1 (MQ=255)                                                                                             aCGACCGCACTCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTGGATATCa            >  1:262915/1‑150 (MQ=255)                                                                                             aCGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGGGCCAATGTGCCTTAAGTGGCGATGGACACGTTTGCCCATTACAGTGCGGGGCGCATTTACTATCAGGTGCTGGATATCa            >  1:93903/1‑150 (MQ=255)                                                                                                       ccTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTGGATATCAAGCAGAGGCt  >  2:381470/1‑150 (MQ=255)                                                                                                                        |                                                                                                                                     GCTGGGTAATTTGGCGCTGTTGCTGGTGGTGCTGATGCTGGCCAGCGGCCTTAGCGCCTACTGGAATGGCCGCGAGGCCGCCGACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTGGATATCAAGCAGAGGCT  >  NC_002947/1621173‑1621424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.