New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1621292 =	13 (0.760)	4 (0.250)	4/258	1.6	24.2%	coding (164/1392 nt)	PP_1421	sensor histidine kinase TctE
	?	NC_002947	1621329 =	13 (0.820)					coding (201/1392 nt)	PP_1421	sensor histidine kinase TctE

ATGCTGGCCAGCGGCCTTAGCGCCTACTGGAATGGCCGCGAGGCCGCCGACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTGGATATCAAGCAGAGGCTGATTTCTGGCTACGAGAACCTGCCGCCACCGCCGCCG  >  NC_002947/1621207‑1621461                                                                                                                           |                                                                                                                                     aTGCTGGCCAGCGGCCTTAGCGCCTACTGGAATGGCCGCGAGGCCGCCGACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGgcg                                                                                                           >  2:91160/1‑150 (MQ=255)                            tGGAATGGCCGCGAGGCCGCCGACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCg                                                                                >  2:182100/1‑150 (MQ=255)                              gAATGGCCGCGAGGCCGCCGACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCggg                                                                              <  1:91160/150‑1 (MQ=255)                                            ccgcagACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGGTGGTGCGTTGAGAGCGGATGTGCGTGACGGGGCGGGTGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATc                                                                >  1:399321/1‑150 (MQ=255)                                               ccgACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGCTGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCGCGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCacg                                                             >  2:47377/1‑148 (MQ=255)                                                      tGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTGGa                                                      >  1:276886/1‑150 (MQ=255)                                                        ccTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTGGata                                                    <  1:227013/150‑1 (MQ=255)                                                           aCGACCGCACTCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTGGATATCa                                                 >  1:262915/1‑150 (MQ=255)                                                           aCGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGGGCCAATGTGCCTTAAGTGGCGATGGACACGTTTGCCCATTACAGTGCGGGGCGCATTTACTATCAGGTGCTGGATATCa                                                 >  1:93903/1‑150 (MQ=255)                                                                     ccTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTGGATATCAAGCAGAGGCt                                       >  2:381470/1‑150 (MQ=255)                                                                                         ccatcgcgctgcgacaggcccgcggcgatggttcGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTAt                                                                 >  1:225416‑M2/35‑104 (MQ=255)                                                                                         ccatcgcgctgcgacaggcccgcggcgatggttcGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTAt                                                                 <  2:225416‑M2/70‑1 (MQ=255)                                                                                          catcgcgctgcgacaggcccgcggcgatggttcGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTg                                                        >  1:228083‑M2/34‑112 (MQ=255)                                                                                          catcgcgctgcgacaggcccgcggcgatggttcGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTg                                                        <  2:228083‑M2/79‑1 (MQ=255)                                                                                          CATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGTCACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTGGATATCAAGCAGAGGCTTATTTCTGGCTACGAGAACCt                  <  2:84631‑M1/150‑1 (MQ=255)                                                                                                     gCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCAtt                                                                       >  1:398246/1‑86 (MQ=255)                                                                                                     gCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCAtt                                                                       <  2:398246/86‑1 (MQ=255)                                                                                                          tCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCCGGTGCTGGATATCAAGCAGAGGCTGATTTCTGGCTACGAGAACCTGCCGCCAccgccgccg  <  2:262915/150‑1 (MQ=255)                                                                                                                           |                                                                                                                                     ATGCTGGCCAGCGGCCTTAGCGCCTACTGGAATGGCCGCGAGGCCGCCGACACTGCCTACGACCGCACCCTGCTGGCTTCGGCGAGAACCATCGCCGCGGGCCTGTCGCAGCGCGATGGTTCGTTGAGCGCGGATGTGCCTTACGTGGCGCTGGACACGTTTGCCTATGACAGTGCGGGGCGCATTTACTATCAGGTGCTGGATATCAAGCAGAGGCTGATTTCTGGCTACGAGAACCTGCCGCCACCGCCGCCG  >  NC_002947/1621207‑1621461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.