New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2085562	12 (0.700)	6 (0.370)	4/262	1.6	42.4%	intergenic (+228/‑367)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	= 2087716	5 (0.310)					intergenic (+486/+432)	PP_1865/aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase

GCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2085406‑2085562 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagcccTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAAAGCCAAAGCAAGA  <  NC_002947/2087716‑2087642                                                                                                                                                                                                                                          GCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAG                                                                                    >  1:372661/1‑150   TTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCA                                                                                  >  1:166400/1‑150                                                                      TTGCGGAGGGAGGTGACGGGCATGGATGCCCGTAATGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAA               >  1:404070/1‑150                                                                                   TGACGGGCATGGATGCCCGTCAAGCGCTGGGCCTCTGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAAAGCCAAAGCAAGA  <  2:404070/150‑1                                                                                     ACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAAA              >  1:239294/1‑136                                                                                     ACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAAA              <  2:239294/136‑1                                                                                     ACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCACTTAGAA                    <  1:140051/130‑1                                                                                     ACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCACTTAGAA                    >  2:140051/1‑130                                                                                                    CGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCC                                                                              >  1:387645/1‑57                                                                                                    CGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCC                                                                              <  2:387645/57‑1                                                                                                                                                                                                                                          GCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2085406‑2085562 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagcccTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAGAAGCAAAAGCCAAAGCAAGA  <  NC_002947/2087716‑2087642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.