| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2085562 | 12 (0.700) | 6 (0.370) | 4/262 | 1.6 | 42.4% | intergenic (+228/‑367) | PP_1864/PP_1865 | hypothetical protein/transposase |
| ? | NC_002947 | = 2087716 | 5 (0.310) | intergenic (+486/+432) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase | |||||
GATATCGCCGGCATGGCTGCCCTCGGCCTGGTGTACCTGGAAGAACGCCGTTGCTCTTGCTCTTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAA > NC_002947/2087576‑2087804 | gATATCGCCGGCATGGCTGCCCTCGGCCTGGTGTACCTGGAAGAACGCCGTTGCTCTTGCTCTTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCg < 1:316614/150‑1 (MQ=255) ccTGGTGTACCTGGAAGAACGCCGTTGCTCTTGCTCTTGCTCTTGCTTTGGCTTTTGCTTCTGAGCGCGCGGTAGTTAAGGAGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGccc < 1:236264/150‑1 (MQ=255) tcttgctTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAgggcttgctcccgggaggaccgcgctgcaggccccatccagaggcccagcgcttgacgggcatccatgcccgtca < 2:404070‑M2/150‑76 (MQ=255) tGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGCTGGGGCCTGCAGCGCGGTCCTCCCggg > 2:153642/1‑150 (MQ=17) ttttGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAgggcttgctcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgt > 1:239294‑M2/1‑63 (MQ=255) ttttGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAgggcttgctcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgt < 2:239294‑M2/136‑74 (MQ=255) tttGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAgggcttgctcccgggaggaccgcgctgcaggccccatcctggggcccagcgcattacgggcatccatgcccgtcacctccctccgcaa > 1:404070‑M2/1‑62 (MQ=255) tGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCAt > 1:230272/1‑87 (MQ=33) tGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCAt < 2:230272/87‑1 (MQ=33) ttCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAgggcttgctcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgt < 1:140051‑M2/130‑74 (MQ=255) ttCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAgggcttgctcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgt > 2:140051‑M2/1‑57 (MQ=255) | GATATCGCCGGCATGGCTGCCCTCGGCCTGGTGTACCTGGAAGAACGCCGTTGCTCTTGCTCTTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAA > NC_002947/2087576‑2087804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |