New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2085562	12 (0.700)	6 (0.370)	4/262	1.6	42.4%	intergenic (+228/‑367)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	= 2087716	5 (0.310)					intergenic (+486/+432)	PP_1865/aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase

CAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATG  >  NC_002947/2085455‑2085707                                                                                                            |                                                                                                                                                  cAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAg                                                                                                         >  2:189118/1‑150 (MQ=11)                     ttGCGGAGGGAGGTGACGGGCATGGATGCCCGTAATGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCtgcgctcggcctcctgaagtcgcaatctgcgtcgcctgaactaccgcgcgcttagaagcaaa                                                                                     >  1:404070‑M1/1‑88 (MQ=255)                            gggaggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTgg                                                                              <  2:344558/150‑1 (MQ=35)                                  tGACGGGCATGGATGCCCGTCAAGCGCTGGGCCTCTGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCtgcgctcggcctcctgaagtcgcaatctgcgtcgcctgaactaccgcgcgcttagaagcaaaagccaaagcaaga                                                                        <  2:404070‑M1/150‑76 (MQ=255)                                    aCGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCtgcgctcggcctcctgaagtcgcaatctgcgtcgcctgaactaccgcgcgcttagaagcaaaa                                                                                    >  1:239294‑M1/1‑73 (MQ=255)                                    aCGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCtgcgctcggcctcctgaagtcgcaatctgcgtcgcctgaactaccgcgcgcttagaagcaaaa                                                                                    <  2:239294‑M1/136‑64 (MQ=255)                                    aCGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCtgcgctcggcctcctgaagtcgcaatctgcgtcgcctgaactaccgcgcacttagaa                                                                                          <  1:140051‑M1/130‑58 (MQ=255)                                    aCGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCtgcgctcggcctcctgaagtcgcaatctgcgtcgcctgaactaccgcgcacttagaa                                                                                          >  2:140051‑M1/1‑73 (MQ=255)                                                   cGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCgg                                                       >  2:78438/1‑150 (MQ=35)                                                    gTCACGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGa                                                      >  2:6955/1‑150 (MQ=25)                                                    gTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTgg                                                                              >  1:48169/1‑126 (MQ=37)                                                    gTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTgg                                                                              <  2:48169/126‑1 (MQ=37)                                                       aaGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAgg                                                   >  1:318233/1‑150 (MQ=35)                                                                              ccTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTg                            >  2:343699/1‑150 (MQ=37)                                                                                          tcctccCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGCCCCAAGTCACCAGCCGGAAGGGCGGAAAGGTGAATATGCGCCTGCATCGtgaatga                >  2:151001/1‑150 (MQ=14)                                                                                            ctccCGGGAGCAAGCCCGGAGTGCGTGGAGCCCGGAGCGTCGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTgaatgaat              >  1:318391/1‑150 (MQ=255)                                                                                             tccCGGGAGCAAGACCGCAGCGAGCGCCACCAGGAGCGCAGCGAAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGAAAAGGTGAATAGGCGCCTGCATCGTGaatgaatg             >  2:212695/1‑150 (MQ=11)                                                                                                        aGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGAtg  <  1:189118/150‑1 (MQ=39)                                                                                                            |                                                                                                                                                  CAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATG  >  NC_002947/2085455‑2085707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.