New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2574385 =15 (0.870)5 (0.300) 4/266 1.6 26.1% coding (1098/1566 nt) PP_2257 aerotaxis receptor
?NC_002947 2574435 = 14 (0.850)coding (1148/1566 nt) PP_2257 aerotaxis receptor

GCCACTGCGCAGGGCATCGATGATGGCCTGGATGTGCAGGGTGGACTGGCGGGTCTTGTCGGCCAGTGCCCGCACCTCGTCGGCGACCACGGCAAAGCCCCGGCCCTGCTCGCCCGCACGGGCAGCCTCGATGGCGGCGTTGAGGGCCAGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2574538‑2574385
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaggGCCGGGGCTTTGCCGTGGTCGCCGACGAGGTGCGGGCACTGGCCGACAAGACCCGCCAGTCCACCCTGCACATCCAGGCCATCATCGATGCCCTGCGCAGTGGCGCCGAGGAAGCCGTGGCGATCGCCAGCCGAGG  >  NC_002947/2574435‑2574570
                                                                                                                                                                                                                                                                                                  
GCCACTGCGCAGGGCATCGATGATGGCCTGGATGTGCAGGGTGGACTGGCGGGTCTTGTCGGCCAGTGCCCGCACCTCGTCGGCGACCACGGCAAAGCCCCGGCCCTGCTCGCCCGCACGGGCAGCCTCGATGGCGGCGTTGAGGGCCAG                                                                                                                                              >  1:288322/1‑150
                                                                                                 CCCCGGCCCTGCTCGCCCGCACGGGCAGCCTCGATGGCGGCGTTGAGGGCCAGCAGGGCCGGGGCTTTGCCGTGGTCGCCGACGAGGTGCGGGCACTGGCCGACAAGACCCGCCAGTCCACCCTGCACATCCAGGCCATCATCGATGCCC                                             >  2:70661/1‑150
                                                                                                  CCCGGCCCTGCTCGCCCGCACGGGCAGCCTCGATGGCGGCGTTGAGGGCCAGCAGGGCCGGGGCTTTGCCGTGGTCGCCGACGAGGTGCGGGCACTGGCCGACAAGACCCGCCAGTCCACCCTGC                                                                     >  1:410459/1‑125
                                                                                                  CCCGGCCCTGCTCGCCCGCACGGGCAGCCTCGATGGCGGCGTTGAGGGCCAGCAGGGCCGGGGCTTTGCCGTGGTCGCCGACGAGGTGCGGGCACTGGCCGACAAGACCCGCCAGTCCACCCTGC                                                                     <  2:410459/125‑1
                                                                                                  CCCGGCCCTGCTCGCCCGCACGGGCAGCCTCGATGGCGGCGTTG‑‑‑‑‑‑‑‑‑AGGGCCGGGGCTTTGCCGTGGTCGCCGACGAGGTGCGGGCACTGGCCGACAAGACCCGCCAGTCCACCCTGCACATCCAGGCCATCATCGATGCCCTGCGCAGTGG                                   >  1:170092/1‑150
                                                                                                                                            TGAGGGCCAGCAGGGCCGGGGCTTTGCCGTGGTCGCCGACGAGGTGCGGGCACTGGCCGACAAGACCCGCCAGTCCACCCTGCACATCCAGGCCATCATCGATGCCCTGCGCAGTGGCGCCGAGGAAGCCGTGGCGATCGCCAGCCGAGG  <  1:70661/150‑1
                                                                                                                                                                                                                                                                                                  
GCCACTGCGCAGGGCATCGATGATGGCCTGGATGTGCAGGGTGGACTGGCGGGTCTTGTCGGCCAGTGCCCGCACCTCGTCGGCGACCACGGCAAAGCCCCGGCCCTGCTCGCCCGCACGGGCAGCCTCGATGGCGGCGTTGAGGGCCAGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2574538‑2574385
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaggGCCGGGGCTTTGCCGTGGTCGCCGACGAGGTGCGGGCACTGGCCGACAAGACCCGCCAGTCCACCCTGCACATCCAGGCCATCATCGATGCCCTGCGCAGTGGCGCCGAGGAAGCCGTGGCGATCGCCAGCCGAGG  >  NC_002947/2574435‑2574570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.