New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	634164 =	12 (0.380)	6 (0.210)	6/244	2.7	36.4%	coding (467/2016 nt)	PP_0546	sigma‑54 dependent transcriptional regulator
	?	NC_002947	634197 =	10 (0.340)					coding (500/2016 nt)	PP_0546	sigma‑54 dependent transcriptional regulator

TTCGATCATCTTCGCCGACAGGTTGACCAACGCCATGGTGTGGAACTGGCTTTGCCGCGATACGTCGGGGCGCGCAGAGGACACGTCGAGCACCGCCAGCAGGTCGCCATGCGGGTCGAACACCGGGCTGGCCGAGC‑AGGTCAGCCCGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/634315‑634164 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcccggtgtTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAGATGATCGAAAGCTGCTATTTCCTGCGCCATTTCGAGC  >  NC_002947/634197‑634343                                                                                                                                                                                                                                                                                                              TTCGATCATCTTCGCCGACAGGTTGACCAACGCCATGGTGTGGAACTGGCTTTGCCGCGATACGTCGGGGCGCGCAGAGGACACGTCGAGCACCGCCAGCAGGTCGCCATGCGGGTCGAACACCGGGCTGGCCGAGC‑AGGTCAGCCCGGT                                                                                                                                                       <  2:480719/150‑1                          ACCAACGCCATGGTGTGGAACTGGCTTTGCCGCGATACGTCGGGGCGCGCAGAGGACACGTCGAGCACCGCCAGCAGGTCGCCATGCGGGTCGAACACCGGGCTGACC‑TGCTCGGCCAGCCCGGTGTTCGACCCGCATG                                                                                                                                         >  1:266708/1‑139                          ACCAACGCCATGGTGTGGAACTGGCTTTGCCGCGATACGTCGGGGCGCGCAGAGGACACGTCGAGCACCGCCAGCAGGTCGCCATGCGGGTCGAACACCGGGCTGACC‑TGCTCGGCCAGCCCGGTGTTCGACCCGCATG                                                                                                                                         <  2:266708/139‑1                                                                                                                          ACCGGGCTGGCCGAGC‑AGGTCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAGATGATCGAA                              >  1:108936/1‑150                                                                                                                            CGGGCTGGCCGAGC‑AGGTCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGAC                                                                                                                  <  1:170308/64‑1                                                                                                                            CGGGCTGGCCGAGC‑AGGTCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGAC                                                                                                                  >  2:170308/1‑64                                                                                                                                    CCGAGC‑AGGTCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAGATGATCGAAAGCTGCTATT                    <  2:108936/150‑1                                                                                                                                                       TGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAGATGATCGAAAGCTGCTATTTCCTGCGCCATTTCGAGC  <  2:606155/150‑1                                                                                                                                                                                                                                                                                                              TTCGATCATCTTCGCCGACAGGTTGACCAACGCCATGGTGTGGAACTGGCTTTGCCGCGATACGTCGGGGCGCGCAGAGGACACGTCGAGCACCGCCAGCAGGTCGCCATGCGGGTCGAACACCGGGCTGGCCGAGC‑AGGTCAGCCCGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/634315‑634164 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcccggtgtTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAGATGATCGAAAGCTGCTATTTCCTGCGCCATTTCGAGC  >  NC_002947/634197‑634343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.