New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	634164 =	12 (0.380)	6 (0.210)	6/244	2.7	36.4%	coding (467/2016 nt)	PP_0546	sigma‑54 dependent transcriptional regulator
	?	NC_002947	634197 =	10 (0.340)					coding (500/2016 nt)	PP_0546	sigma‑54 dependent transcriptional regulator

GCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAGATGATCGAAAGCTGCTATTTCCTGCGCCATTTCGAGC  >  NC_002947/634071‑634343                                                                                                                                |                                                                                                                                                   gCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGGCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTgg                                                                                                                             >  2:494770/1‑150 (MQ=255) accaacgccatggtgtggaactggctttgccgcgatacgtcggggcgcgcagaggacacgtcgagcaccgccagcaggtcgccatgcgggtcgaacaccgggctgacctgctcggccagcccggtgtTCGACCCGCATg                                                                                                                                         >  1:266708‑M2/128‑139 (MQ=255) accaacgccatggtgtggaactggctttgccgcgatacgtcggggcgcgcagaggacacgtcgagcaccgccagcaggtcgccatgcgggtcgaacaccgggctgacctgctcggccagcccggtgtTCGACCCGCATg                                                                                                                                         <  2:266708‑M2/12‑1 (MQ=255)      gcgcgcGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTg                                                                                                                        <  2:490606/150‑1 (MQ=255)       cgcgcgAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGc                                                                                                                       <  2:40040/150‑1 (MQ=255)                      aTGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGCCCCGCATGGCGGCCTGCTGGCTGTGCTCTACGTTTCCTCTg                                                                                                        >  2:175018/1‑150 (MQ=255)                                      tCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCAAACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATc                                                                                        <  2:37946/150‑1 (MQ=255)                                                                   atcAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGt                                                           <  1:494770/150‑1 (MQ=255)                                                                                  catgcgggtcgaACACCGGGCTGGCCGAGCA‑GGTCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGt                                                       >  1:266708‑M1/13‑139 (MQ=255)                                                                                  catgcgggtcgaACACCGGGCTGGCCGAGCA‑GGTCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGt                                                       <  2:266708‑M1/127‑1 (MQ=255)                                                                                        gCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAga                                      >  1:606155/1‑150 (MQ=255)                                                                                          cGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAgatg                                    >  1:498899/1‑150 (MQ=255)                                                                                            tCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAgatgat                                  >  1:604443/1‑150 (MQ=255)                                                                                                ACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAGATGATCGaa                              <  2:480719‑M1/150‑1 (MQ=255)                                                                                                 accgggctggccgagcaggtcagcccggtgtTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAGATGATCGaa                              >  1:108936‑M2/32‑150 (MQ=255)                                                                                                   cgggctggccgagcaggtcagcccggtgtTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGAc                                                                                                                  <  1:170308‑M2/35‑1 (MQ=255)                                                                                                   cgggctggccgagcaggtcagcccggtgtTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGAc                                                                                                                  >  2:170308‑M2/30‑64 (MQ=255)                                                                                                         aCCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAGATGATCGAAAGCTGCTAt                     >  2:134908/1‑150 (MQ=255)                                                                                                           ccgagcaggtcagcccggtgtTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAGATGATCGAAAGCTGCTAtt                    <  2:108936‑M2/129‑1 (MQ=255)                                                                                                                             tgtTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAGATGATCGAAAGCTGCTATTTCCTGCGCCATTTCGagc  <  2:606155‑M2/147‑1 (MQ=255)                                                                                                                                |                                                                                                                                                   GCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAGATGATCGAAAGCTGCTATTTCCTGCGCCATTTCGAGC  >  NC_002947/634071‑634343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.