New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	634164 =	12 (0.380)	6 (0.210)	6/244	2.7	36.4%	coding (467/2016 nt)	PP_0546	sigma‑54 dependent transcriptional regulator
	?	NC_002947	634197 =	10 (0.340)					coding (500/2016 nt)	PP_0546	sigma‑54 dependent transcriptional regulator

CCGCCGAGCGGCGCAGCTTCGAGCGTGCCGGGCTGTGGCTGGGCGCTGACTGGAGCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAGATGAT  >  NC_002947/634017‑634311                                                                                                                                                    |                                                                                                                                                     gctcgaaatggcgcaggaaatagcagctttcgatcatcttcgccgacaggttgaccaacgccatggtgtggaactggctttgccgcgatacgtcggggcgcgcagaggacacgtcgagcaccgccagcaggtcgccatgcgggtcgaaca                                                                                                                                                    <  2:606155‑M1/3‑1 (MQ=255)               aGCTTCGAGCGTGCCGGGCTGTGGCTGGGCGCTGACTGGAGCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑Gc                                                                                                                                     <  1:377236/150‑1 (MQ=255)                   aatagcagctttcgatcatcttcgccgacaggttgaccaacgccatggtgtggaactggctttgccgcgatacgtcggggcgcgcagaggacacgtcgagcaccgccagcaggtcgccatgcgggtcgaACACCGGGCTGACCT‑GCTCgg                                                                                                                                 <  2:108936‑M1/21‑1 (MQ=255)                             ttcgatcatcttcgccgacaggttgaccaacgccatggtgtggaactggctttgccgcgatacgtcggggcgcgcagaggacacgtcgagcaccgccagcaggtcgccatgcgggtcgaACACCGGGCTGACCT‑GCTCGGCCAGCCCGgt                                                                                                                       >  1:108936‑M1/120‑150 (MQ=255)                                                       gCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGAc                                                                                                                                          <  2:794417/106‑1 (MQ=255)                                                       gCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGAc                                                                                                                                          >  1:794417/1‑106 (MQ=255)                                                       gCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGGCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTgg                                                                                             >  2:494770/1‑150 (MQ=255)                                                            gcgcgcGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTg                                                                                        <  2:490606/150‑1 (MQ=255)                                                             cgcgcgAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGc                                                                                       <  2:40040/150‑1 (MQ=255)                                                                            aTGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGCCCCGCATGGCGGCCTGCTGGCTGTGCTCTACGTTTCCTCTg                                                                        >  2:175018/1‑150 (MQ=255)                                                                                            tCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCAAACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATc                                                        <  2:37946/150‑1 (MQ=255)                                                                                                                 gtcgagcaccgccagcaggtcgccatgcgggtcgaACACCGGGCTGACCT‑GCTCGGCCAGCCCg                                                                                                                         >  2:170308‑M1/36‑64 (MQ=255)                                                                                                                 gtcgagcaccgccagcaggtcgccatgcgggtcgaACACCGGGCTGACCT‑GCTCGGCCAGCCCg                                                                                                                         <  1:170308‑M1/29‑1 (MQ=255)                                                                                                                         atcAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGt                           <  1:494770/150‑1 (MQ=255)                                                                                                                                        catgcgggtcgaACACCGGGCTGGCCGAGCA‑GGTCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGt                       <  2:266708‑M1/127‑1 (MQ=255)                                                                                                                                        catgcgggtcgaACACCGGGCTGGCCGAGCA‑GGTCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGt                       >  1:266708‑M1/13‑139 (MQ=255)                                                                                                                                              gCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAga      >  1:606155/1‑150 (MQ=255)                                                                                                                                                cGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAgatg    >  1:498899/1‑150 (MQ=255)                                                                                                                                                  tCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAgatgat  >  1:604443/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CCGCCGAGCGGCGCAGCTTCGAGCGTGCCGGGCTGTGGCTGGGCGCTGACTGGAGCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGACCT‑GCTCGGCCAGCCCGGTGTTCGACCCGCATGGCGACCTGCTGGCGGTGCTCGACGTGTCCTCTGCGCGCCCCGACGTATCGCGGCAAAGCCAGTTCCACACCATGGCGTTGGTCAACCTGTCGGCGAAGATGAT  >  NC_002947/634017‑634311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.