New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3556182	25 (0.790)	8 (0.260)	6/262	2.9	26.0%	coding (556/1188 nt)	PP_3140	group 2 family glycosyl transferase
	?	NC_002947	= 3556204	21 (0.670)					coding (578/1188 nt)	PP_3140	group 2 family glycosyl transferase

CCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3556088‑3556182 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggCGCGCCCAGCCACGTGGCCGCACCAGGTTCTTGA  <  NC_002947/3556204‑3556171                                                                                                                                   CCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGCGCGCCCAGCCACGTGGCCGCACCAGGg        >  2:132766/1‑122 CCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGCGCGCCCAGCCACGTGGCCGCACCAGGT        <  1:132766/123‑1  CGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGCGCGCCCAGCCACGTGGCCGCACCAGGTTCTTGA  >  1:127322/1‑128  CGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGCGCGCCCAGCCACGTGGCCGCACCAGGTTCTTGA  <  1:663791/128‑1  CGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGCGCGCCCAGCCACGTGGCCGCACCAGGTTCTTGA  <  2:127322/128‑1  CGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGCGCGCCCAGCCACGTGGCCGCACCAGGTTCTTGA  >  2:663791/1‑128                                                                   CGAGTTTGCCTGGCGGGTCAAGAACCTGGCGCGCCCAGCCACGTGGCCGCAC             <  1:714876/52‑1                                                                   CGAGTTTGCCTGGCGGGTCAAGAACCTGGCGCGCCCAGCCACGTGGCCGCAC             >  2:714876/1‑52                                                                                                                                   CCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3556088‑3556182 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggCGCGCCCAGCCACGTGGCCGCACCAGGTTCTTGA  <  NC_002947/3556204‑3556171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.