New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3556182	25 (0.790)	8 (0.260)	6/262	2.9	26.0%	coding (556/1188 nt)	PP_3140	group 2 family glycosyl transferase
	?	NC_002947	= 3556204	21 (0.670)					coding (578/1188 nt)	PP_3140	group 2 family glycosyl transferase

CCAGGTGGGCGAGGGGGCGATCGACTGCCTGGCGCGCCGCTGCCACGCACTTGCCCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGATGGGCGCGGGCATGGCGTTCGGCTGGCACGATCTGAGTCTGATCAACCTGGCCAATGGTCATCTGGTCGAGGATGTGAAGCTGGGCCTGGACCTTTGCCAGC  >  NC_002947/3556034‑3556329                                                                                                                                                     |                                                                                                                                                    ccAGGTGGGCGAGGGGGCGATCGACTGCCTGGCGCGCCGCTGCCACGCACTTGCCCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGt                                                                                                                                                    >  1:638500/1‑150 (MQ=255)     gTGGGCGAGGGGGCGATCGACTGCCTGGCGCGCCGCTGCCACGCACTTGCCCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCg                                                                                                                                                 >  1:75093/1‑149 (MQ=255)     gTGGGCGAGGGGGCGATCGACTGCCTGGCGCGCCGCTGCCACGCACTTGCCCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCg                                                                                                                                                 <  2:75093/149‑1 (MQ=255)           gAGGGGGCGATCGACTGCCTGGCGCGCCGCTGCCACGCACTTGCCCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGt                                                                                                                                          <  1:497403/150‑1 (MQ=255)              ggggCGATCGACTGCCTGGCGCGCCGCTGCCACGCACTTGCCCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGc                                                                                                                                               <  2:156882/142‑1 (MQ=255)              ggggCGATCGACTGCCTGGCGCGCCGCTGCCACGCACTTGCCCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGc                                                                                                                                               >  1:156882/1‑142 (MQ=255)                     tCGACTGTCTGGCGCGCCGCTGCCACGCACTTGCCCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGgcgc                                                                                                                                <  2:489371/150‑1 (MQ=255)                            ccTGGCGCGCCGCTGCCACGCACTTGCCCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTggg                                                                                                                         >  2:149185/1‑150 (MQ=255)                                      cgcTGCCACGCACTTGCCCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCtgccatgc                                                                                                               <  1:149185/150‑1 (MQ=255)                                             aCGCACTTGCCCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGa                                                                                                        >  1:318762/1‑150 (MQ=255)                                              cGCACTTGCCCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGTTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGAt                                                                                                       <  2:69988/150‑1 (MQ=255)                                                   ttGCCCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGATGGgcg                                                                                                  >  1:767894/1‑150 (MQ=255)                                                       ccgcccgGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGcgcgcccagccacgtggccgcaccaggt                                                                                                                         <  1:132766‑M1/123‑29 (MQ=255)                                                       ccgcccgGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGcgcgcccagccacgtggccgcaccaggg                                                                                                                         >  2:132766‑M1/1‑95 (MQ=255)                                                        cgcccgGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGcgcgcccagccacgtggccgcaccaggttcttga                                                                                                                   <  1:663791‑M1/128‑35 (MQ=255)                                                        cgcccgGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGcgcgcccagccacgtggccgcaccaggttcttga                                                                                                                   >  2:663791‑M1/1‑94 (MQ=255)                                                        cgcccgGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGcgcgcccagccacgtggccgcaccaggttcttga                                                                                                                   <  2:127322‑M1/128‑35 (MQ=255)                                                        cgcccgGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGcgcgcccagccacgtggccgcaccaggttcttga                                                                                                                   >  1:127322‑M1/1‑94 (MQ=255)                                                                    tCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCtg                                                                                                                     <  1:427844/114‑1 (MQ=255)                                                                    tCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGAGGCCACGTGGCTGGGCGCGCCTGGGCCtg                                                                                                                     >  2:427844/1‑114 (MQ=255)                                                                               gATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGATGGGCGCGGGCATGGCGTTCGGCTGGCACGATCt                                                                      <  2:767894/150‑1 (MQ=255)                                                                                  cccagCACCTGCCGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGATGGGCGCGGGCATGGCGTTCGGCTGGCACGATCTGAg                                                                   >  2:478753/5‑150 (MQ=255)                                                                                        aCCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGATGGGCGCGGGCATGGCGTTCGGCTGGCACGATCTGAGTCTGAt                                                             <  1:756008/150‑1 (MQ=255)                                                                                                      ggTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGATGGGCGCGGGCATGGCGTTCGGCTGGCACGATCTGAGTCTGATCAACCTGGCCAATg                                               <  2:638500/150‑1 (MQ=255)                                                                                                               tGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGATGGGCGCGGGCATGGCGTTCGGCTGGCACGATCTGAGTCTGATCAACCTGGCCAATGGTCATCTgg                                      <  1:344981/150‑1 (MQ=255)                                                                                                                gCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGATGGGCGCGGGCATGGCGTTCGGCTGGCACGATCTGAGTCTGATCAACCTGGCCAATGGTCATCTGGt                                     >  2:81820/1‑150 (MQ=255)                                                                                                                        ccGTGTTTGCCTGGGGTGTCGAGGAACGGGTTTGGGCACTCTGCCCGGCTCGCCTGTGCCTGCCATGCCAACTGCTGGGCGCGGGCATGGCCTTCGGCACACCCTCTCGGACTCGCTTCATCCTGGCCAATGGTCATCTGGTCGAGGAtg                             >  2:773206/1‑150 (MQ=255)                                                                                                                         cGAGTTTGCCTGGCGGGTCAAGAACCTGGcgcgcccagccacgtggccgcac                                                                                                                              <  1:714876‑M1/52‑24 (MQ=255)                                                                                                                         cGAGTTTGCCTGGCGGGTCAAGAACCTGGcgcgcccagccacgtggccgcac                                                                                                                              >  2:714876‑M1/1‑29 (MQ=255)                                                                                                                             tttGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGATGGGCGCGGGCATGGCGTTCGGCTGGCACGATCTGAGTCTGATCAACCTGGCCAATGGTCATCTGGTCGAGGATGTGAAg                        <  2:318762/150‑1 (MQ=255)                                                                                                                                          tCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGccaggttcttgacccgccaggcaaactcggcaacctgcaccctcaacccagcacctgccggtgcacgcatcagatacagcgactgtaccgggcg                                 <  2:127322‑M2/128‑95 (MQ=255)                                                                                                                                          tCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGccaggttcttgacccgccaggcaaactcggcaacctgcaccctcaacccagcacctgccggtgcacgcatcagatacagcgactgtaccgggcg                                 >  2:663791‑M2/1‑34 (MQ=255)                                                                                                                                          tCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGccaggttcttgacccgccaggcaaactcggcaacctgcaccctcaacccagcacctgccggtgcacgcatcagatacagcgactgtaccgggcg                                 <  1:663791‑M2/128‑95 (MQ=255)                                                                                                                                          tCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGccaggttcttgacccgccaggcaaactcggcaacctgcaccctcaacccagcacctgccggtgcacgcatcagatacagcgactgtaccgggcg                                 >  1:127322‑M2/1‑34 (MQ=255)                                                                                                                                          tCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGATGGGCGCGGGCATGGCGTTCGGCTGGCACGATCTGAGTCTGATCAAc                                                         >  2:630567/1‑104 (MQ=255)                                                                                                                                          tCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGATGGGCGCGGGCATGGCGTTCGGCTGGCACGATCTGAGTCTGATCAAc                                                         <  1:630567/104‑1 (MQ=255)                                                                                                                                                ccctGGTGCGGCCACGTGGCTGGGCGCGccaggttcttgacccgccaggcaaactcggcaacctgcaccctcaacccagcacctgccggtgcacgcatcagatacagcgactgtaccgggcgg                                >  2:132766‑M2/2‑28 (MQ=255)                                                                                                                                                aCCTGGTGCGGCCACGTGGCTGGGCGCGccaggttcttgacccgccaggcaaactcggcaacctgcaccctcaacccagcacctgccggtgcacgcatcagatacagcgactgtaccgggcgg                                <  1:132766‑M2/123‑96 (MQ=255)                                                                                                                                                   tGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGATGGGCGCGGGCATGGCGTTCGGCTGGCACGATCTGAGTCTGATCAACCTGGCCAATGGTCATCTGGTCGAGGATGTGAAGCTGGGCCTGGACCTTTGCcagc  >  1:672644/1‑150 (MQ=255)                                                                                                                                                     gTGCGGCCACGTGGCTGGGCGCGccaggttcttgacccgccaggcaaactcg                                                                                                  <  1:714876‑M2/52‑30 (MQ=255)                                                                                                                                                     gTGCGGCCACGTGGCTGGGCGCGccaggttcttgacccgccaggcaaactcg                                                                                                  >  2:714876‑M2/1‑23 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CCAGGTGGGCGAGGGGGCGATCGACTGCCTGGCGCGCCGCTGCCACGCACTTGCCCGCCCGGTACAGTCGCTGTATCTGATGCGTGCACCGGCAGGTGCTGGGTTGAGGGTGCAGGTTGCCGAGTTTGCCTGGCGGGTCAAGAACCTGGTGCGGCCACGTGGCTGGGCGCGCCTGGGCCTGCCATGCCAACTGATGGGCGCGGGCATGGCGTTCGGCTGGCACGATCTGAGTCTGATCAACCTGGCCAATGGTCATCTGGTCGAGGATGTGAAGCTGGGCCTGGACCTTTGCCAGC  >  NC_002947/3556034‑3556329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.