New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4860181	27 (0.850)	10 (0.340)	8/244	2.2	25.4%	coding (914/2331 nt)	ligA	DNA ligase
	?	NC_002947	= 4860205	34 (1.170)					coding (890/2331 nt)	ligA	DNA ligase

TCACACCGGCCACCTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4860047‑4860181 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccagcgcgAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGGTCAAGG  <  NC_002947/4860205‑4860059                                                                                                                                                                                                                                                                                            TCACACCGGCCACCTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCG                                                                                                                                      >  2:726091/1‑150                  ACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGG                                                                                                                     <  1:726091/150‑1                                    ACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCGATTGCCCAcaa                                                                                                                                                       <  1:567081/98‑4                                    ACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCGATTGCCCAcaa                                                                                                                                                       >  2:567081/1‑95                                                    CCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGa                                                                                                                     <  1:692796/116‑2                                                    CCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGa                                                                                                                     >  2:692796/1‑115                                                                        TCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCCGGGCTTCCGCGCCCGTGAGCCGCGCTGGG                                                                                                                    <  1:162157/97‑1                                                                        TCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCCGGGCTTCCGCGCCCGTGAGCCGCGCTGGG                                                                                                                    >  2:162157/1‑97                                                                             ATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGG                                                                                                                    <  1:12127/92‑1                                                                             ATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGG                                                                                                                    >  2:12127/1‑92                                                                                                           CGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGC                                                <  1:486819/130‑1                                                                                                           CGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGC                                                >  2:486819/1‑130                                                                                                                          ggaaGCCCAGCTCGCGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAA             >  2:372944/5‑150                                                                                                                                 CAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGGTC      <  2:37163/150‑1                                                                                                                                    CGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGGTCAAG   <  1:705917/150‑1                                                                                                                                     GCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGGTCAAGG  >  2:396243/1‑150                                                                                                                                                                                                                                                                                            TCACACCGGCCACCTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4860047‑4860181 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccagcgcgAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGGTCAAGG  <  NC_002947/4860205‑4860059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.