New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4860181	27 (0.850)	10 (0.340)	8/244	2.2	25.4%	coding (914/2331 nt)	ligA	DNA ligase
	?	NC_002947	= 4860205	34 (1.170)					coding (890/2331 nt)	ligA	DNA ligase

CCTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGCCC  >  NC_002947/4860059‑4860354                                                                                                                                                    |                                                                                                                                                      ccTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTcgc                                                                                                                                                    >  2:396243‑M2/1‑147 (MQ=255)  cTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTcgcg                                                                                                                                                   <  1:705917‑M2/150‑5 (MQ=255)     gACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTcgcgctg                                                                                                                                                <  2:37163‑M2/150‑8 (MQ=255)            ttCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CGcgagctgggcttcc                                                                                                                                         >  2:372944‑M2/1‑136 (MQ=255)                  cgcgCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTg                                                                                                                                   <  1:421546/150‑1 (MQ=255)                          aGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCtt                                                                                                                           <  2:350048/150‑1 (MQ=255)                           ggCGTTACTGCACCCCGACGGCCAACCTGGACGTCGACGTCCCGCACCACGGGTAGCTCTTCCATGGCCGGGAACTGGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTg                                                                                                                          <  2:294028/150‑1 (MQ=255)                            gCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGa                                                                                                                         <  1:123472/150‑1 (MQ=255)                             cGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGaa                                                                                                                        <  2:642338/150‑1 (MQ=255)                                 aCTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACt                                                                                                                    >  1:91150/1‑150 (MQ=255)                                   tGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTAc                                                                                                                  >  2:301422/1‑150 (MQ=255)                                          gTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGACGACCAT‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCg                                                                                                           >  1:451859/1‑150 (MQ=255)                                              ggCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTATTGACCTTGAACACTACCCCGTCGAtct                                                                                                       >  2:659410/1‑150 (MQ=255)                                               gCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTcgcgctgggcgattgcccacaagttcccg                                                                                                                          <  1:486819‑M2/130‑30 (MQ=255)                                               gCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTcgcgctgggcgattgcccacaagttcccg                                                                                                                          >  2:486819‑M2/1‑101 (MQ=255)                                               gCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGAtctc                                                                                                      >  1:504262/1‑150 (MQ=255)                                                  aaCCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATa                                                                                                   <  2:504262/150‑1 (MQ=255)                                                   aCCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATAc                                                                                                  <  1:37163/150‑1 (MQ=255)                                                               aCATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTa                                                                                      <  1:526510/150‑1 (MQ=255)                                                                 aTCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTAcg                                                                                    >  2:16697/1‑150 (MQ=255)                                                                  tCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTATTAagc                                                                                   >  2:222894/1‑150 (MQ=255)                                                                        aCCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTATTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCg                                                                             <  1:659410/150‑1 (MQ=255)                                                                          cTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGcc                                                                           <  2:103598/150‑1 (MQ=255)                                                                          cTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGcc                                                                           >  2:508746/1‑150 (MQ=255)                                                                             ggTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAAt                                                                        <  2:705917/150‑1 (MQ=255)                                                                                       tCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGAtag                                                              <  2:108304/150‑1 (MQ=255)                                                                                         cATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGATGTTACGCCGCTCGCCAATGTCGCGAtagta                                                            >  1:489210/1‑150 (MQ=255)                                                                                                    aCTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACGTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCAct                                                 <  1:301422/150‑1 (MQ=255)                                                                                                          gggCAATCGCCCAGCGCGGCTCACGGGAGCGG‑CGCCATGTCTCGCGGTTGGCGGCCAGGCTGTTGACCCCGTGCACTACAGCCGAGAGCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGGGATAGTACGGTACGCACGCTTCgg                                           >  1:459565/1‑149 (MQ=255)                                                                                                           ggCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGTCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGAt                                          <  2:144454/150‑1 (MQ=255)                                                                                                                   cccAGCGCGGCTCACGGGCGCGGAAGCCCGG‑CTcgcgctgggcgattgcccacaagttcccggccatggaagagctgaccgaggtgctggatgtcga                                                                                       >  2:162157‑M2/1‑33 (MQ=255)                                                                                                                   cccAGCGCGGCTCACGGGCGCGGAAGCCCGG‑CTcgcgctgggcgattgcccacaagttcccggccatggaagagctgaccgaggtgctggatgtcga                                                                                       <  1:162157‑M2/97‑65 (MQ=255)                                                                                                                   cccAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTcgcgctgggcgattgcccacaagttcccggccatggaagagctgaccgaggtgctggat                                                                                            >  2:12127‑M2/1‑33 (MQ=255)                                                                                                                   cccAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTcgcgctgggcgattgcccacaagttcccggccatggaagagctgaccgaggtgctggat                                                                                            <  1:12127‑M2/92‑60 (MQ=255)                                                                                                                    tcaGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTcgcgctgggcgattgcccacaagttcccggccatggaagagctgaccgaggtgctggatgtcgagttccaggttggccgtacgg                                                                   <  1:692796‑M2/115‑85 (MQ=255)                                                                                                                    tcaGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTcgcgctgggcgattgcccacaagttcccggccatggaagagctgaccgaggtgctggatgtcgagttccaggttggccgtacgg                                                                   >  2:692796‑M2/2‑32 (MQ=255)                                                                                                                    ccAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTcgcgctgggcgattgcccacaagttcccggccatggaagagctgaccgaggtgctggatgtcgagttccaggttggccgtacgggtgcagtaacgcctgtggcgcggctgaagccggt                                 <  1:726091‑M2/150‑119 (MQ=255)                                                                                                                            gCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGACCACTACCACGTCGATCTCATACGGCAGGCTTTTACTCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGa                         <  2:91150/150‑1 (MQ=255)                                                                                                                                  gggCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGttt                           >  1:593044/1‑142 (MQ=255)                                                                                                                                  gggCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGttt                           <  2:593044/142‑1 (MQ=255)                                                                                                                                     cgcgGAAGCCCAG‑CTcgcgctgggcgattgcccacaagttcccggccatggaagagctgaccgaggtgctggatgtcgagttccaggttggccgtacgggtgcagtaacgcctgtggcgcggctgaagccggtcaaggtggccggtgtga                >  2:726091‑M2/1‑15 (MQ=255)                                                                                                                                              ccAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGa                                                                 >  2:312287/1‑92 (MQ=255)                                                                                                                                              ccAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGa                                                                 <  1:312287/92‑1 (MQ=255)                                                                                                                                               cAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGcc                                       >  2:300173/1‑117 (MQ=255)                                                                                                                                               cAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGcc                                       <  1:300173/117‑1 (MQ=255)                                                                                                                                                    tCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGttt                           <  2:122414/125‑1 (MQ=255)                                                                                                                                                    tCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGttt                           >  1:122414/1‑125 (MQ=255)                                                                                                                                                    tCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGccc  >  2:499455/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CCTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAG‑CTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGCCC  >  NC_002947/4860059‑4860354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.