New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3166465	24 (0.760)	9 (0.300)	8/254	2.3	27.3%	coding (854/1299 nt)	PP_2780	3‑oxoacyl‑ACP synthase
	?	NC_002947	= 3166487	25 (0.830)					coding (876/1299 nt)	PP_2780	3‑oxoacyl‑ACP synthase

TGCGGGTGAGGGCGGTGGTTTTGTCGTGCTCGAAACCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGATGCCGGGCTGGCGCCGCAACAGGTCGATCTGATCAATGCCCACGGTACGTCGACACCCCTCAACGATGCCGCCGAAACCCTGGCGATCAAGAC  >  NC_002947/3166343‑3166612                                                                                                                           |                                                                                                                                                     tGCGGGTGAGGGCGGTGGTTTTGTCGTGCTCGAAACCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCgcggt                                                                                                                           >  2:435097‑M2/1‑145 (MQ=255) tGCGGGTGAGGGCGGTGGTTTTGTCGTGCTCGAAACCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCgcggt                                                                                                                           >  2:551660‑M2/1‑145 (MQ=255)     ggTGAGGGCGGTGGTTTTGTCGTGCTCGAAACCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTg                                                                                                                       >  2:437945/1‑150 (MQ=255)      gTGAGGGCGGTGGTTTTGTCGTGCTCGAAACCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTgg                                                                                                                      <  1:153534/150‑1 (MQ=255)           ggCGGTGGTTTTGTCGTGCTCGAAACCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCgccccggccctgcgggtcgggtgcggtgattttgtag                                                                                                                 <  1:200761‑M1/150‑38 (MQ=255)                  gtTTTGTCGTGCTCGAAACCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCacccggccctgcgggtcgggtgcgg                                                                                                                             <  2:459016‑M1/131‑26 (MQ=255)                  gtTTTGTCGTGCTCGAAACCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTGCGGCAGCAGCCTGGATGCCTACAAAATCACCGCacccggccctgcgggtcgggtgcgg                                                                                                                             >  1:459016‑M1/1‑106 (MQ=255)                   ctttGTCGTGCTCGAAACCCTCGAACGGGCGCTCGCCCGAGGGGAAACACCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAgg‑cggc                                                                                                        >  1:147909/2‑150 (MQ=255)                           tGCTCGAAACCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACgg                                                                                                >  2:302190/1‑150 (MQ=255)                             cTCGAAACCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGAt                                                                                              >  1:625087/1‑150 (MQ=255)                              tCGAAACCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCacccggccctgcgggtcgggtgcggtg                                                                                                                           >  1:255794‑M1/1‑94 (MQ=255)                              tCGAAACCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCacccggccctgcgggtcgggtgcggtg                                                                                                                           <  2:255794‑M1/121‑28 (MQ=255)                                 aaaCCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGATGCCg                                                                                          <  1:661957/150‑1 (MQ=255)                                  aaCCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGATGCCgg                                                                                         <  2:625087/150‑1 (MQ=255)                                     ccTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCAC‑‑Cgccccggccctgcgggtcgggtgcg                                                                                                                             >  2:276923‑M1/1‑85 (MQ=255)                                     ccTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCAC‑‑Cgccccggccctgcgggtcgggtgcg                                                                                                                             <  1:276923‑M1/110‑26 (MQ=255)                                                 gcTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGATGCCGGGCTGGCGCCGCAACa                                                                          >  1:634473/1‑150 (MQ=255)                                                   tCGTCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGATGCCGGGCTGGCGCCGCAACAgg                                                                        <  2:385650/150‑1 (MQ=255)                                                          aGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGATGCCGGGCTGGCGCCGCAACAGGTCGATCt                                                                 <  2:634473/150‑1 (MQ=255)                                                               cAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCgccccggccctgcgggtcgggtgcgg                                                                                                                            <  2:501888‑M1/87‑27 (MQ=255)                                                               cAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCgccccggccctgcgggtcgggtgcgg                                                                                                                            >  1:501888‑M1/1‑61 (MQ=255)                                                                aaCGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCacc                                                                                                                                                   <  2:551673/63‑1 (MQ=255)                                                                aaCGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCacc                                                                                                                                                   >  1:551673/1‑63 (MQ=255)                                                                       tACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGATGCCGGGCTGGCGCCGCAACAGGTCGATCTGATCAATGCCCAc                                                    <  1:302190/150‑1 (MQ=255)                                                                                   cTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCGGGCGATGCAGGCCGGCCGAGA‑TCACGCCGGGCTTGCGCCGCAACAGGTCGATCTGATCAATGCCCACGGTACGTCGaca                                        >  1:183874/1‑150 (MQ=255)                                                                                      ggTTTCCGCAGCAGCCTGTATGGCTACAAACTCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGTATGCCGCGCTGGCGCCGCAACAGCTCGATCTGATCAATGCCCACGGTACGTCGACAccc                                     <  2:276888/150‑1 (MQ=255)                                                                                                  agcCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGATGCCGGGCTGGCGCCGCAACAGGTCGATCTGATCAATGCCCACGGTACGTCGACACCCCTCAACGATgcc                         >  1:662872/1‑150 (MQ=255)                                                                                                         aTGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGAc                                                                                                  >  1:565784/1‑70 (MQ=255)                                                                                                         aTGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGAc                                                                                                  <  2:565784/70‑1 (MQ=255)                                                                                                             cTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCgcggtgattttgtaggcatccaggctgctgccgaaacccagcacttcggcgtacggcgttgcccctcgggcgagcgcccgttcgagggtttcgagcacgacaaaaccaccgcc               <  1:200761‑M2/150‑114 (MQ=255)                                                                                                              tACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGATGCCGGGCTGGCGCCGCAACAGGTCGATCTGa                                                               <  1:646127/100‑1 (MQ=255)                                                                                                              tACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGATGCCGGGCTGGCGCCGCAACAGGTCGATCTGa                                                               >  2:646127/1‑100 (MQ=255)                                                                                                              tACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGATGCCGGGCTGGCGCCGCAACAGGTCGATCTGATCAATGCCCACGGTACGTCGACACCCCTCAACGATGCCGCCGAAACCCTg             <  1:437945/150‑1 (MQ=255)                                                                                                               aCAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGATGCCGGGCTGGCGCCGCAACAGGTCGATCTGATCAATGCCCACGGTACGTCGACACCCCTCAACGATGCCGCCGAAACCCTgg            <  1:483561/150‑1 (MQ=255)                                                                                                                 aaaaTCACCGCACCCGACCCGCAGGGCCGGGGCgcggt                                                                                                                           <  2:344050‑M2/38‑6 (MQ=255)                                                                                                                 aaaaTCACCGCACCCGACCCGCAGGGCCGGGGCgcggt                                                                                                                           >  1:344050‑M2/1‑33 (MQ=255)                                                                                                                 aaaaTCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGATGCCAGAATAACGCCGCAACAGGTCGATCTGATCAATGCCCACGGTACGTCGACACCCCTCAACGATGCCGCCGAAACCCTGGCg          >  1:382531/1‑150 (MQ=255)                                                                                                                      cACCGCACCCGACCCGCAGGGCCGGGTcggtgattttgtaggcatccaggctgctgccgaaacccagcacttcggcgtacggcgttgcccctcgggcgagcgcccgttcgagggtttcga                                    <  2:255794‑M2/121‑94 (MQ=255)                                                                                                                      cACCGCACCCGACCCGCAGGGCCGGGTcggtgattttgtaggcatccaggctgctgccgaaacccagcacttcggcgtacggcgttgcccctcgggcgagcgcccgttcgagggtttcga                                    >  1:255794‑M2/1‑28 (MQ=255)                                                                                                                       aCCGCgccccggccctgcgggtcgggtgcggtgattttgtaggcatccaggctgctgccgaaacccagcacttcggcgtacggcgttgcccctcgggcgagcgcccgttcgagggtttcgagcacgacaaaaccaccgccctcacccgca     >  2:551660‑M1/1‑5 (MQ=255)                                                                                                                       aCCGCgccccggccctgcgggtcgggtgcggtgattttgtaggcatccaggctgctgccgaaacccagcacttcggcgtacggcgttgcccctcgggcgagcgcccgttcgagggtttcgagcacgacaaaaccaccgccctcacccgca     >  2:435097‑M1/1‑5 (MQ=255)                                                                                                                       aCCGCgccccggccctgcgggtcgggtgcggtgatttt                                                                                                                     >  1:344050‑M1/1‑5 (MQ=255)                                                                                                                       aCCGCgccccggccctgcgggtcgggtgcggtgatttt                                                                                                                     <  2:344050‑M1/38‑34 (MQ=255)                                                                                                                        ccGCACCCGACCCGCAGGGCCGGGTcggtgattttgtaggcatccaggctgctgccgcaacccagcacttcggcgtacggcgttgcccctcgggcgagcgcccgttcgagggtttcgagcacgacaaaac                        >  1:459016‑M2/1‑26 (MQ=255)                                                                                                                        ccGCACCCGACCCGCAGGGCCGGGTcggtgattttgtaggcatccaggctgctgccgaaacccagcacttcggcgtacggcgttgcccctcgggcgagcgcccgttcgagggtttcgagcacgacaaaac                        <  2:459016‑M2/131‑106 (MQ=255)                                                                                                                        ccGCACCCGACCCGCAGGGCCGGGGCgcggtgattttgtaggcatccaggctgctgccgaaacccagcacttcggcgtacggcgttg                                                                   <  2:501888‑M2/87‑62 (MQ=255)                                                                                                                        ccGCACCCGACCCGCAGGGCCGGGGCgcggtgattttgtaggcatccaggctgctgccgaaacccagcacttcggcgtacggcgttg                                                                   >  1:501888‑M2/1‑26 (MQ=255)                                                                                                                         cGCACCCGGCCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCCGG‑CGGCCCTGACGGATGCCGGGCTGGCGCCGCAACAGGGCGATCTGATCAATGCCCACGGTACGTCGACACCCCTCGACGATGCCGCCGAAACCCTGGCGATCAAGAc  <  2:556984/150‑1 (MQ=255)                                                                                                                         cGCACCCGACCCGCAGGGCCGGGGCggtgattttgtaggcatccaggctgctgccgaaacccagcacttcggcgtacggcgttgcccctcgggcgagcgcccgttcgagg                                           <  1:276923‑M2/110‑86 (MQ=255)                                                                                                                         cGCACCCGACCCGCAGGGCCGGGGCggtgattttgtaggcatccaggctgctgccgaaacccagcacttcggcgtacggcgttgcccctcgggcgagcgcccgttcgagg                                           >  2:276923‑M2/1‑25 (MQ=255)                                                                                                                           |                                                                                                                                                     TGCGGGTGAGGGCGGTGGTTTTGTCGTGCTCGAAACCCTCGAACGGGCGCTCGCCCGAGGGGCAACGCCGTACGCCGAAGTGCTGGGTTTCGGCAGCAGCCTGGATGCCTACAAAATCACCGCACCCGACCCGCAGGGCCGGGGCGCGGTGCTGGCGATGCAGG‑CGGCCCTGACGGATGCCGGGCTGGCGCCGCAACAGGTCGATCTGATCAATGCCCACGGTACGTCGACACCCCTCAACGATGCCGCCGAAACCCTGGCGATCAAGAC  >  NC_002947/3166343‑3166612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.