New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	619244 =	96 (1.320)	5 (0.070)	4/236	NT	5.1%	coding (757/1329 nt)	pfeS‑I	histidine kinase
	?	NC_002947	619271 =	96 (1.380)					coding (730/1329 nt)	pfeS‑I	histidine kinase

CCCTGCCCCTGCAGGAGCGGCGTGATGAGCTGGGTGAGCTGGCTCAGGCCTTCGAGCACATGGCCGGGCGCCTGCGCCAGAGCCTTGAGCAACAGCGCCTGCTGTTGCGCACGCTGTCTCACGAATTGCGCACGCCGCTGGCGCGGCTGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/619396‑619244 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcaATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCATCGGCC  >  NC_002947/619271‑619419                                                                                                                                                                                                                                                                                                                CCCTGCCCCTGCAGGAGCGGCGTGATGAGCTGGGTGAGCTGGCTCAGGCCTTCGAGCACATGGCCGGGCGCCTGCGCCAGAGCCTTGAGCAACAGCGCCTGCTGTTGCGCACGCTGTCTCACGAATTGCGCACGCCGCTGGCGCGGCTGC                                                                                                                                                          <  2:1813841/150‑1   CTGCCCCTGCAGGAGCGGCGTGATGAGCTGGGTGAGCTGGCTCAGGCCTTCGAGCACATGGCCGGGCGCCTGCGCCAGAGCCTTGAGCAACAGCGCCTGCTGTTGCGCACGCTGTCTCACGAATTGCGCACGCCGCTGGCGCGGCTGCGC                                                                                                                                                        <  1:1527498/150‑1                        GATGAGCTGGGTGAGCTGGCCCAGGCCTTCGAGCACATGGCCGGGCGCCTGCGCCAGAGCCTTGAGCAACAGCGCCTGCTGTTGCGCACGCTGTCTCACGAATTGCGCACGCCGCTGGCGCGGCTGC                                                                                                                                                          >  1:1292280/1‑127                        GATGAGCTGGGTGAGCTGGCCCAGGCCTTCGAGCACATGGCCGGGCGCCTGCGCCAGAGCCTTGAGCAACAGCGCCTGCTGTTGCGCACGCTGTCTCACGAATTGCGCACGCCGCTGGCGCGGCTGC                                                                                                                                                          <  2:1292280/127‑1                                                                                                                         ACGAATTGCGCACGCCGCTGGCGCGGCTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAG                                                                                                            <  1:1720186/76‑1                                                                                                                         ACGAATTGCGCACGCCGCTGGCGCGGCTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAG                                                                                                            >  2:1720186/1‑76                                                                                                                                  GCACGCCGCTGGCGCGGCTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGG                         >  2:588781/1‑150                                                                                                                                  GCACGCCGCTGGCGCGGCTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTC                                                                                                               <  1:10937/64‑1                                                                                                                                  GCACGCCGCTGGCGCGGCTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTC                                                                                                               >  2:10937/1‑64                                                                                                                                                    TGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCAT       >  1:60442/1‑150                                                                                                                                                    TGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCAT       >  2:1575446/1‑150                                                                                                                                                      CGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCATCG     >  2:1059514/1‑150                                                                                                                                                      CGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCATCG     <  2:189493/150‑1                                                                                                                                                       GCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCATCGG    >  1:774388/1‑150                                                                                                                                                       GCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCATCGG    >  2:1605448/1‑150                                                                                                                                                         AATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCATCGGCC  >  2:1806810/1‑150                                                                                                                                                                                                                                                                                                                CCCTGCCCCTGCAGGAGCGGCGTGATGAGCTGGGTGAGCTGGCTCAGGCCTTCGAGCACATGGCCGGGCGCCTGCGCCAGAGCCTTGAGCAACAGCGCCTGCTGTTGCGCACGCTGTCTCACGAATTGCGCACGCCGCTGGCGCGGCTGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/619396‑619244 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcaATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCATCGGCC  >  NC_002947/619271‑619419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.