| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 883834 = | 18 (0.250) | 11 (0.200) | 9/184 | NT | 41.3% | intergenic (+69/‑259) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| ? | NC_002947 | 883908 = | 18 (0.330) | intergenic (+143/‑185) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator | |||||
ATGGGCGCAATAGGCGCGGAAAAGACTGCGACAAAAAGCAACATGGCTGATGGACAGGGGCTGGGGCGGGGGTTTGGAGAGGTATTCAGGAGGTTGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/884012‑883834‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACGGCTAGTCTCGCAAA > NC_002947/883908‑884051 ATGGGCGCAATAGGCGCGGAAAAGACTGCGACAAAAAGCAACATGGCTGATGGACAGGGGCTGGGGCGGGGGTTTGGAGAGGTATTCAGGAGGTTGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTGTA < 2:1273919/150‑1 GCAATAGGCGCGGAAAAGACTGCGACAAAAAGCAACATGGCTGATGGACAGGGGCTGGGGCGGGGGTTTGGAGAGGTATTCAGGAGGTTGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTGTAGGAGCG < 2:552627/150‑1 AGGCGCGGAAAAGACTGCGACAAAAAGCAACATGGCTGATGGACAGGGGCTGGGGCGGGGGTTTGGAGAAGTATTCAGGAGGTTGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTC < 1:1739319/150‑1 AAAAGACTGCGACAAAAAGCAACATGGCTGATGGACAGGGGCTGGGGCGGGGGTTTGGAGAGGTATTCAGGAGGTTGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGg > 1:1086661/1‑149 AGACTGCGACAAAAAGCAACATGGCTGATGGACAGGGGCTGGGGCGGGGGTTTGGAGAGGTATTCAGGAGGTTGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGA < 1:1930993/150‑1 GACTGCGACAAAAAGCAACATGGCTGATTGAGAGGGGCTGGGGCGGGGGTTTGGAGAGGTATTCAGGAGGTTGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAG < 2:253260/150‑1 GACTGCGACAAAAAGCAACATGGCTGATGGACAGGGGCTGGGGCGGGTGTTTGGAGAGGTATTCAGGAGGTTGATTGCCTTGCCCGGCCTCTCCGCGTTTTAACCCGCTCCTACAGGTTCCG‑CGGTAGGAGCGGGTTCACCCGCGAAGAG < 1:536867/150‑1 GACTGCGACAAAAAGCAACATGGCTGATGGACAGGGGCTGGGGCGGGGGTTTGGAGAGGTATTCAGGAGGTTGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTGTAG < 1:1032967/128‑1 GACTGCGACAAAAAGCAACATGGCTGATGGACAGGGGCTGGGGCGGGGGTTTGGAGAGGTATTCAGGAGGTTGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTGTAG > 2:1032967/1‑128 CTGCGACAAAAAGCAACATGGCTGATGGACAGGGGCTGGGGCGGGGGTTTGGAGAGGTATTCAGGATGTTGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTGCCGCGGGAC‑CTGTAGGAGCGGGGTCACCCGCGAAGAGGg > 1:1248831/1‑149 GCGGCAAAATGCAACATGGCTGATGGACAGGGGCTGGGGCGGGGCTTTGGAGAGGTATTCAGGACGTTGATTGCCGTGCCTGGCCTCTTCGCGGGTGAACCCGCTCCCATCGCCGAAC‑CTGTATGAGCGGGCTCACCCGCGAAGAGGCCG < 2:777425/150‑1 AAAAGCAACATGGCTGATGGACAGGGGCTGGGGCGGGGGTTTGGAGAGGTATTCAGGAGGTTGATTGCCTTACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAG < 1:792393/150‑1 AGCAACATGGCTGATGGACAGGGGCTGGGGCGGGGGTTTGGAGAGGTATTCAGGAGGTTGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAG‑GTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCA < 1:1620989/150‑1 CTGGGGCGGGGGTTTGGAGAGGTATTCAGGAGGTTGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTGT > 1:1532090/1‑89 CTGGGGCGGGGGTTTGGAGAGGTATTCAGGAGGTTGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTGT < 2:1532090/89‑1 CCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAG > 2:1519620/1‑77 CCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAG < 1:1519620/77‑1 CCCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATT > 2:115042/1‑150 CCCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGC < 2:1563488/99‑1 CCCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGC > 1:1563488/1‑99 CCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTG > 1:1609178/1‑150 CCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTG > 1:1512419/1‑150 CCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGC < 1:290144/112‑1 CCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGC > 2:290144/1‑112 CCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCC < 1:1317040/100‑1 CCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCC > 2:1317040/1‑100 ACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAGCTGGGTCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATC < 1:991211/150‑1 tatAGCGGGGTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGC < 2:243231/147‑1 GAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCC > 2:547179/1‑70 GAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCC < 1:547179/70‑1 GCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCG > 1:965346/1‑150 GCGGGTTCACCCGCGAAGAGGCCGGACAAGGCAAGCAACCTCCTGAATACCCATCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAaga > 1:243231/1‑147 GTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAA < 1:552627/150‑1 GTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCA < 2:1032349/84‑1 GTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCA > 1:1032349/1‑84 TTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAAC > 1:1258866/1‑150 CACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACGG < 2:1620989/150‑1 cCCCGCGAAGAGGCCGGGCAAGGCAATCCACCTCCTGAATACCTCTCCAACCCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACGGC < 2:1247465/149‑1 ACCCGCGAAGAGGCCGGGCAGGGCAATCAACCTCCTGAATAGCTCTCCAAAGCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTCTCGCAGTCTTTTCTGCGCCTATTGCGCCCCTCATCTTCAAATGCGCAGCTTTAtctgc > 2:677760/1‑145 ACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACGGC < 2:1930993/150‑1 CCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACGTCTA < 2:965346/150‑1 CCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACGGCTA > 2:1003964/1‑150 CCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAACACCCGTCCTTAACGGCTA > 2:839573/1‑150 CCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCA > 2:1598483/1‑95 CCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCA < 1:1598483/95‑1 GCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACGGCTAGT > 1:351175/1‑150 GCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCG < 2:1049094/91‑1 GCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCG > 1:1049094/1‑91 GCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCACTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACGGCTAGT > 1:1495171/1‑150 AGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATC > 2:488961/1‑117 AGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATC < 1:488961/117‑1 GCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACGGCTAGTCTCGCAAA > 1:160216/1‑150 ATGGGCGCAATAGGCGCGGAAAAGACTGCGACAAAAAGCAACATGGCTGATGGACAGGGGCTGGGGCGGGGGTTTGGAGAGGTATTCAGGAGGTTGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC‑CTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/884012‑883834‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACGGCTAGTCTCGCAAA > NC_002947/883908‑884051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |