| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1221410 | 91 (1.250) | 8 (0.110) | 7/244 | NT | 8.4% | coding (1806/1908 nt) | PP_1067 | sensor histidine kinase |
| ? | NC_002947 | = 1221433 | 84 (1.170) | coding (1783/1908 nt) | PP_1067 | sensor histidine kinase | |||||
GCACATGCGGGTCGTCTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1221260‑1221410‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTCGGCGAGCCTTGCCGCCGCCGCCAAGGGAAGCCTGAACGTCGAGCATCCCGTCACAGGCGGCACGGCCTTCGTCCTGGCCCTGCCTCTGGTTTCACCCCCTAGCGAATCGGCAGAGCATCCATGAACCAAGCGCCTCTTACCGTCCT < NC_002947/1221433‑1221286 GCACATGCGGGTCGTCTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTT < 2:1861671/150‑1 ccaATGCGGGTCGTCTTCGACTATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGAGTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTG > 2:1392472/4‑150 CACATGCGGGTCGTCTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTG < 1:411948/150‑1 TTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGTCGGCGAGCCTTGCCGCCGCCGCCAAGGGAAGCCTGAA > 1:1009695/1‑142 TTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGTCGGCGAGCCTTGCCGCCGCCGCCAAGGGAAGCCTGAA < 2:1009695/142‑1 GATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGAGCCTTGCCGCCGCCGC < 1:423907/110‑1 GATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGAGCCTTGCCGCCGCCGC > 2:423907/1‑110 CCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGTCGGCGAGCCTTGCCGCCGCCGCCAAGGGAAGC > 1:1239153/1‑101 CCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGTCGGCGAGCCTTGCCGCCGCCGCCAAGGGAAGC < 2:1239153/101‑1 CCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGTCGGCGAGCCTTGCCGCCGCCGCCAA < 1:1428563/94‑1 CCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGTCGGCGAGCCTTGCCGCCGCCGCCAA > 2:1428563/1‑94 TGTCGGCGAGCCTTGCCGCCGCCGCCAAGGGAAGCCTGAACGTCGAGCATCCCGTCACAGGCGGCACGGCCTTCGTCCTGGCCCTGCCTCTGGTTTCACCCCCTAGCGAATCGGCAGAGCATCCATGAACCAAGCGCCTCTTACCGTCCT < 2:1084584/150‑1 GCACATGCGGGTCGTCTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1221260‑1221410‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTCGGCGAGCCTTGCCGCCGCCGCCAAGGGAAGCCTGAACGTCGAGCATCCCGTCACAGGCGGCACGGCCTTCGTCCTGGCCCTGCCTCTGGTTTCACCCCCTAGCGAATCGGCAGAGCATCCATGAACCAAGCGCCTCTTACCGTCCT < NC_002947/1221433‑1221286 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |