New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 122141091 (1.250)8 (0.110) 7/244 NT 8.4% coding (1806/1908 nt) PP_1067 sensor histidine kinase
?NC_002947 = 1221433 84 (1.170)coding (1783/1908 nt) PP_1067 sensor histidine kinase

Only 100 of 120 total aligned reads displayed.

CACATGCGGGTCGTCTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATACCGTGGCCGTTGTCGCGCACCTGCAAACGGTACTTGT  >  NC_002947/1221261‑1221558
                                                                                                                                                     |                                                                                                                                                    
ccaatgcGGGTCGTCTTCGACTATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGAGTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTG                                                                                                                                                      >  2:1392472‑M1/4‑150 (MQ=255)
cacaTGCGGGTCGTCTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTG                                                                                                                                                      <  1:411948‑M1/150‑1 (MQ=255)
 acaTGCGGGTCGTCTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTgg                                                                                                                                                     <  1:1890650/150‑1 (MQ=255)
   aTGCGGGTCGTCTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTggcg                                                                                                                                                   >  1:597311/1‑150 (MQ=255)
   aTGCGGGTCGTCTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTggcg                                                                                                                                                   >  1:560787/1‑150 (MQ=255)
       gggTCGTCTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTggcggcgg                                                                                                                                               <  1:448444/150‑1 (MQ=255)
        ggTCGTCTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTggcggcggc                                                                                                                                              <  1:1035517/150‑1 (MQ=255)
        ggTCGTCTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTggcggcggc                                                                                                                                              >  2:1457025/1‑150 (MQ=255)
         gtcgtcTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTggcggcggcg                                                                                                                                             >  1:800184/1‑150 (MQ=255)
         gtcgtcTTCGACGATCAGGACGGTAAGAGGCGCTTGGTCCATGGATGCTTGGCCGACTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGACGTGCCGCCTGTGACGGGAGGCTCGACGATCAGGCTTCCCTTggcggcggcg                                                                                                                                             >  1:800176/1‑150 (MQ=255)
          tcgtcTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTggcggcggcgg                                                                                                                                            >  1:854641/1‑150 (MQ=255)
           cgtcTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAGCCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTggcggcggcggc                                                                                                                                           <  2:1067866/150‑1 (MQ=255)
             tcTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCaa                                                                                                                                         >  2:410770/1‑150 (MQ=255)
             tcTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCaa                                                                                                                                         <  2:1469822/150‑1 (MQ=255)
               ttCGACGATCAGGACGCTAAGAGGCGCGTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAgg                                                                                                                                       >  2:172212/1‑150 (MQ=255)
                 cgacgaTCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCt                                                                                                                                     >  1:716001/1‑150 (MQ=255)
                         aGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGAca                                                                                                                             <  2:1084584‑M2/150‑3 (MQ=255)
                              ggTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTc                                                                                                                        <  1:410770/150‑1 (MQ=255)
                              ggTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTc                                                                                                                        >  1:1103876/1‑150 (MQ=255)
                               gTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTca                                                                                                                       <  2:854641/150‑1 (MQ=255)
                               gTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTca                                                                                                                       >  2:1578019/1‑150 (MQ=255)
                                tAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACATGGTcag                                                                                                                      >  1:1176122/1‑150 (MQ=255)
                                 aggagGCGCTTGGTTCATGGATTCTCTGCCGATTCGCTAGGGTGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGGCTGGGACGGGATGCTCGACGTTCAGGCTTCCCGTGGCGGCGGCTGCAAGGCTCGCCGACAGGATcagg                                                                                                                     <  2:597311/148‑1 (MQ=255)
                                  ggtggCGCTTGGTTCATGGCTGCTCTGCCGATTTGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGGTCGCCGACAGGGTcaggc                                                                                                                    <  2:800176/147‑1 (MQ=255)
                                   gagGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTcaggcc                                                                                                                   >  2:1699534/1‑150 (MQ=255)
                                    agGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTcaggccc                                                                                                                  <  2:680352/150‑1 (MQ=255)
                                     ggCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTcaggccca                                                                                                                 <  1:244112/150‑1 (MQ=255)
                                      gcgcTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTcaggcccag                                                                                                                <  1:602006/150‑1 (MQ=255)
                                        gcTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTcaggcccaggc                                                                                                              <  2:1827460/150‑1 (MQ=255)
                                        gcTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTcaggcccaggc                                                                                                              <  1:933956/150‑1 (MQ=255)
                                        gcTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTcaggcccaggc                                                                                                              <  2:560787/150‑1 (MQ=255)
                                              ttCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGtcggcgagccttgccgccgccgccaagggaagcctgaa                                                                                                                >  1:1009695‑M1/1‑104 (MQ=255)
                                              ttCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTcaggcccaggcccaggc                                                                                                        >  1:1829833/1‑150 (MQ=255)
                                                cATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCa                                                                                                      <  1:1699534/150‑1 (MQ=255)
                                                        ctctGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGcc                                                                                              <  1:1558825/150‑1 (MQ=255)
                                                          ctGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCg                                                                                            >  1:908996/1‑150 (MQ=255)
                                                            gCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGt                                                                                          <  1:286247/150‑1 (MQ=255)
                                                             ccGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGtt                                                                                         >  2:225938/1‑150 (MQ=255)
                                                               gATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTtg                                                                                       <  2:1632991/150‑1 (MQ=255)
                                                                aTTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTtgg                                                                                      <  2:1066711/150‑1 (MQ=255)
                                                                aTTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTtgg                                                                                      <  2:1802091/150‑1 (MQ=255)
                                                                aTTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTtgg                                                                                      <  2:569921/150‑1 (MQ=255)
                                                                aTTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTtgg                                                                                      <  1:1513246/150‑1 (MQ=255)
                                                                     cTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTa                                                                                 >  1:1282576/1‑150 (MQ=255)
                                                                      tAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTaa                                                                                <  1:1143388/150‑1 (MQ=255)
                                                                       aGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTaaa                                                                               >  2:936328/1‑150 (MQ=255)
                                                                           ggTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGACAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTaaagaaa                                                                           >  1:764522/1‑150 (MQ=255)
                                                                            gTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGc                                                                                                                                  >  2:963611/1‑94 (MQ=255)
                                                                            gTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGc                                                                                                                                  <  1:963611/94‑1 (MQ=255)
                                                                            gTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGACAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTaaagaaag                                                                          <  2:764522/150‑1 (MQ=255)
                                                                                aaCCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTc                                                                      <  2:1194642/150‑1 (MQ=255)
                                                                                  ccAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGtcggcgagccttgccgccgccgccaagggaagc                                                                                                                     >  1:1239153‑M1/1‑68 (MQ=255)
                                                                                  ccAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGtcggcgagccttgccgccgccgccaagggaagc                                                                                                                     <  2:1239153‑M1/101‑34 (MQ=255)
                                                                                  ccAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGtcggcgagccttgccgccgccgccaa                                                                                                                            <  1:1428563‑M1/94‑27 (MQ=255)
                                                                                   cAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAgg                                                                                                                                       >  1:1034745/1‑82 (MQ=255)
                                                                                   cAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAgg                                                                                                                                       <  2:1034745/82‑1 (MQ=255)
                                                                                     gagGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACa                                                                 <  2:1282576/150‑1 (MQ=255)
                                                                                       ggCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAgg                                                               <  2:1103876/150‑1 (MQ=255)
                                                                                        gCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGc                                                                                                                                  >  1:396786/1‑82 (MQ=255)
                                                                                        gCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGc                                                                                                                                  <  2:396786/82‑1 (MQ=255)
                                                                                        gCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTcagg                                                                                                                     <  2:1294481/95‑1 (MQ=255)
                                                                                        gCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTcagg                                                                                                                     >  1:1294481/1‑95 (MQ=255)
                                                                                          aGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGc                                                            >  2:1810803/1‑150 (MQ=255)
                                                                                              ccAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTggcggcggcgg                                                                                                                                            >  1:1179411/1‑66 (MQ=255)
                                                                                              ccAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTggcggcggcgg                                                                                                                                            <  2:1179411/66‑1 (MQ=255)
                                                                                              ccAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTgc                                                        >  1:220742/1‑150 (MQ=255)
                                                                                               cAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGt                                                                                          <  2:951592/115‑1 (MQ=255)
                                                                                               cAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGt                                                                                          >  1:951592/1‑115 (MQ=255)
                                                                                               cAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTgcg                                                       >  1:1175166/1‑150 (MQ=255)
                                                                                                  gACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAAGCCACAGCTTTTCGCTCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTgcgcgc                                                    >  2:1022099/1‑150 (MQ=255)
                                                                                                     gAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTc                                                 >  1:699699/1‑150 (MQ=255)
                                                                                                     gAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTc                                                 <  2:716001/150‑1 (MQ=255)
                                                                                                         gCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTcaggccc                                                                                                                  >  1:1734149/1‑81 (MQ=255)
                                                                                                         gCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTcaggccc                                                                                                                  <  2:1734149/81‑1 (MQ=255)
                                                                                                         gCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGt                                                              >  2:832453/1‑133 (MQ=255)
                                                                                                                cgccTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATAc                                      >  2:716833/1‑150 (MQ=255)
                                                                                                                 gccTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATAcc                                     >  2:1768244/1‑150 (MQ=255)
                                                                                                                    tgtgACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATACCGTg                                  <  1:1810803/150‑1 (MQ=255)
                                                                                                                     gtgACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATACCGTgg                                 <  2:1829833/150‑1 (MQ=255)
                                                                                                                        aCGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATACCGTGGCCg                              >  2:1824904/1‑150 (MQ=255)
                                                                                                                          gggATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATACCGTGGCCGtt                            >  1:461505/1‑150 (MQ=255)
                                                                                                                           ggATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATACCGTGGCCGTTg                           <  1:1768244/150‑1 (MQ=255)
                                                                                                                               gCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATACCGTGGCCGTTGTcgc                       <  2:260595/150‑1 (MQ=255)
                                                                                                                                 tCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATACCGTGGCCGTTGTCgcgc                     >  1:1519123/1‑150 (MQ=255)
                                                                                                                                       ttCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGAcaagggaagcctgaacgtcgagcatcccgtcacaggcggcacggccttcgtcctggccctgcctctggtttcaccccctagcgaatcggcagagcatccatgaa                       <  2:1009695‑M2/142‑105 (MQ=255)
                                                                                                                                       ttCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGAcaagggaagcctgaacgtcgagcatcccgtcacaggcggcacggccttcgtcctggccctgcctctggtttcaccccctagcgaatcggcagagcatccatgaa                       >  1:1009695‑M2/1‑38 (MQ=255)
                                                                                                                                          aGGCTTCCCGCGGCGGCGGGGGCAAGGCCCGCCGACAGGGTCAGGCCCAAGCCCAGGCCATGCTCGCCCGGTTTGGTTGTAAATAAAGGTTCGATCAGGTGCTTGCGCGCTTCGGCGTCGATACCGTGGCCGTTGTGGCGCACCTGCaaa            <  2:478399/150‑1 (MQ=255)
                                                                                                                                           ggCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAGGCTGCGAGCAGGTGCGTGCACGCTTCGGGGTCGATACCGTGGCCCTTGTCTCGCACCTGCAAAc           >  2:366936/1‑150 (MQ=255)
                                                                                                                                            gCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGAcaagggaagcctgaacgtcgagcatcccgtcacaggcggcacggccttcgtcctggccctgcctctgg                                                           <  2:1239153‑M2/101‑69 (MQ=255)
                                                                                                                                            gCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGAcaagggaagcctgaacgtcgagcatcccgtcacaggcggcacggccttcgtcctggccctgcctctgg                                                           >  1:1239153‑M2/1‑33 (MQ=255)
                                                                                                                                            gCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTgcgc                                                      >  1:1084063/1‑106 (MQ=255)
                                                                                                                                               tCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATACCGTGGCCGTTGTCGCGCACCTGCAAACGGTa       <  1:1665376/150‑1 (MQ=255)
                                                                                                                                               tCCCGTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATACCGTGGCCGTTGTCGCGCACCTGCAAACGGTa       <  1:1457025/150‑1 (MQ=255)
                                                                                                                                                 ccTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAg                                                                >  2:61184/1‑91 (MQ=255)
                                                                                                                                                   ttGGCGGCGGCGGCAAGGCTCGCCGAcaagggaagcctgaacgtcgagcatcccgtcacaggcggcacggccttcgtcctggccctgcctctgg                                                           >  2:1428563‑M2/1‑26 (MQ=255)
                                                                                                                                                   ttGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGAt                                        >  2:1709445/1‑113 (MQ=255)
                                                                                                                                                   ttGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGAt                                        <  1:1709445/113‑1 (MQ=255)
                                                                                                                                                   ttGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATACCGTGGCCGTTGTCGCGCACCTGCAAACGGTACTTg   >  1:144608/1‑150 (MQ=255)
                                                                                                                                                   ttGGCGGCGGCGGCAAGGCTCGCCGAAAAGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATACCGTGGCCGTTGTCGCGCACCTGCAAACGGTACTTg   >  1:356724/1‑150 (MQ=255)
                                                                                                                                                    tGtcggcgagccttgccgccgccgccaagggaagcctgaacgtcgagcatcccgtcacaggcggcacggccttcgtcctggccctgcctctggtttcaccccctagcgaatcggcagagcatccatgaaccaagcgcctcttaccgtcct  <  2:1084584‑M1/150‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
CACATGCGGGTCGTCTTCGACGATCAGGACGGTAAGAGGCGCTTGGTTCATGGATGCTCTGCCGATTCGCTAGGGGGTGAAACCAGAGGCAGGGCCAGGACGAAGGCCGTGCCGCCTGTGACGGGATGCTCGACGTTCAGGCTTCCCTTGGCGGCGGCGGCAAGGCTCGCCGACAGGGTCAGGCCCAGGCCCAGGCCATGCTCGCCCGGTTTGGTGGTAAAGAAAGGTTCGAACAGGTGCTTGCGCGCTTCGGGGTCGATACCGTGGCCGTTGTCGCGCACCTGCAAACGGTACTTGT  >  NC_002947/1221261‑1221558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.