| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1976254 | 122 (1.670) | 7 (0.110) | 7/222 | NT | 5.7% | intergenic (+39/‑126) | pheA/PP_1770 | bifunctional chorismate mutase/prephenate dehydratase/3‑phosphoshikimate 1‑carboxyvinyltransferase |
| ? | NC_002947 | = 1976306 | 121 (1.850) | intergenic (+91/‑74) | pheA/PP_1770 | bifunctional chorismate mutase/prephenate dehydratase/3‑phosphoshikimate 1‑carboxyvinyltransferase | |||||
GTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCAGCCCTTCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1976093‑1976254‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccttcgcgggcTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCCGCGAAGGGCTGCAAGGCAGCCCCAAGGCCCCTGAATCAAAGCACCGCCTTCGGATAAGAGCCCAGCACCTTCAGCGCCACAGCCTCCTGGCT < NC_002947/1976306‑1976159 GTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCAG < 2:73501/150‑1 TGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCAGC < 2:962570/150‑1 GTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCAGCC < 1:627101/150‑1 TCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCAGCCCT < 1:538474/150‑1 ATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCAGCCCTTCGCG > 1:1111837/1‑150 ATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCAGCCCTTCGCG > 2:1932859/1‑150 TCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAATGCGTTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCAGCCCTTCGCGG > 1:118368/1‑150 CGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCAGCCCTTCGCGGG < 1:1347329/150‑1 CCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCAG > 1:632012/1‑121 CCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCAG < 2:632012/121‑1 CGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCA > 1:908978/1‑150 CGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCAAGGCAGCCCcaa > 1:972852/1‑116 GCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCAGCCCTTCGCGGGCATGCCCGCTCCCACAGAGATCGGCATCACATGCTCA < 2:1111837/150‑1 CAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCCG < 1:199260/150‑1 TTTGATTCAGGGGCCTTGGGGCTGCCTTGCAGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCC > 2:1546074/1‑100 TTTGATTCAGGGGCCTTGGGGCTGCCTTGCAGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCC < 1:1546074/100‑1 TCAGGGGCCTTGGGGCTGCCTTGCAGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTG < 1:691636/79‑1 TCAGGGGCCTTGGGGCTGCCTTGCAGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTG > 2:691636/1‑79 GCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCCGCGAAGGGCTGCAAGGCAGCCCCAAGGCCCCTGAATCAAAGCACCGCCTTCGGATAAGAGCCCAGCACCTTCAGCGCCACA < 2:1570500/150‑1 CCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCCGCGAAGGGCTGCAAGGCAGCCCCAAGGCCCCTGAATCAAAGCACCGCCTTCGGATAAGAGCCCAGCACCTTCAGCGCCACAGC < 1:133979/150‑1 GCGGGCTAGCCCGCTCCCACAGAGATCGGAATCACATGCTCACTGTGGGAGCGGGCATGCCCGCGAAGGGCTGCAAGGCAGCCCCAAGGCCCCTGAATCAAAGCACCGCCTTCGGATAAGAGCCCAGCACCTTCAGCGCCACAGCCTCCT < 1:957246/150‑1 CGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCCGCGAAGGGCTGCAAGGCAGCCCCAAGGCCCCT < 1:960530/93‑1 CGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCCGCGAAGGGCTGCAAGGCAGCCCCAAGGCCCCT > 2:960530/1‑93 GGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCCGCGAAGGGCTGCAAGGCAGCCCCAAGGCCCCTGAATCAAAGCACCGCCTTCGGATAAGAGCCCAGCACCTTCAGCGCCACAGCCTCCTGGC < 2:1312943/150‑1 GCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCCGCGAAGGGCTGCAAGGCAGCCCCAAGGCCCCTGAATCAAAGCACCGCCTTCGGATAAGAGCCCAGCACCTTCAGCGCCACAGCCTCCTGGCT > 1:1797977/1‑150 GTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCGCTGAAGGTGCTGGGCTCTTATCCGAAGGCGGTGCTTTGATTCAGGGGCCTTGGGGCTGCCTTGCAGCCCTTCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1976093‑1976254‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccttcgcgggcTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCCGCGAAGGGCTGCAAGGCAGCCCCAAGGCCCCTGAATCAAAGCACCGCCTTCGGATAAGAGCCCAGCACCTTCAGCGCCACAGCCTCCTGGCT < NC_002947/1976306‑1976159 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |