New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2004645 =	50 (0.680)	10 (0.150)	8/230	NT	17.6%	intergenic (+92/+58)	PP_1787/PP_1788	hypothetical protein/hypothetical protein
	?	NC_002947	2004687 =	47 (0.690)					intergenic (+134/+16)	PP_1787/PP_1788	hypothetical protein/hypothetical protein

TCTATCAATGTCCTTAATCAAAAAAGATGGCACCATTAAAACCAATCCGTATTGCAAGCTTAGATCAACACTATCATAAATACACATCACAAAGCCTGAGGCGAGCGGTTTCACATCCAAAAAACCGATCGCCTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2004781‑2004645 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcctcagGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTGCCATCTTTTTTGATTAAGGACATTGATAGATAAAGTACTTGTGCGAGTCCGATAAGGTTGTAAATGTCGCCAACTATTT  >  NC_002947/2004687‑2004830                                                                                                                                                                                                                                                                                           TCTATCAATGACCGTAATCAAAAAAGATGGCACCATTAAAACCAATCCGTATTGCAAGCTTAGATCAACACTATCATAAATACACATCACAAAGCCTGAGGCGAGCGGTTTCACATCCAAAAAACCGATCGCCTCAGGCTTTGTGATGTG                                                                                                                                     >  2:1530311/1‑150                    AAAAAAGATGGCACCATTAAAACCAATCCGTATTGCAAGCTTAGATCAACACTATCATAAATACACATCACAAAGCCTGAGGCGAGCGGTTTCACATCCAAAAAACCGATCGCCTCA                                                                                                                                                   <  2:654551/117‑1                    AAAAAAGATGGCACCATTAAAACCAATCCGTATTGCAAGCTTAGATCAACACTATCATAAATACACATCACAAAGCCTGAGGCGAGCGGTTTCACATCCAAAAAACCGATCGCCTCA                                                                                                                                                   >  1:654551/1‑117                        AAGATGGCACCATTAAAACCAATCCGTATTGCAAGCTTAGATCAACACTATCATAAATACACATCACAAAGCCTGAGGCGAGCGGTTTCACATCCAAAAAACCGATCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAA                                                                                                              <  1:1530311/150‑1                                    gTAAAACCAATCCGTATTGCAAGCTTAGATCAACACTATCATAAATACACATCACAAAGCCTGAGGCGAGCGGTTTCACATCCAAAAAACCGATCGCCTCAG                                                                                                                                                  >  2:1332433/2‑102                                    TTAAAACCAATCCGTATTGCAAGCTTAGATCAACACTATCATAAATACACATCACAAAGCCTGAGGCGAGCGGTTTCACATCCAAAAAACCGATCGCCTCAG                                                                                                                                                  <  1:1332433/102‑1                                                                                    ACATCACAAAGCCTGAGGCGAGCGGTTTCACATCCAAAAAACCGATCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTGCCATCTTTTTTGATTAAGGACATTGATAGAT                                                  >  1:1161060/1‑150                                                                                                 TGAGGCGAGCGGTTTCACATCCAAAAAACCGATCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTGCCATCTTTTTTGATTAAGGACATTGATAGATAAAGTACTTGTGC                                     <  2:1161060/150‑1                                                                                                       GAGCGGTTTCACATCCAAAAAACCGATCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGT                                                                                  >  1:566073/1‑99                                                                                                       GAGCGGTTTCACATCCAAAAAACCGATCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGT                                                                                  <  2:566073/99‑1                                                                                                                   ATCCAAAAAACCGATCGCCTCAGGCTTTGTGATGT                                                                                                                                      <  1:1135715/35‑1                                                                                                                   ATCCAAAAAACCGATCGCCTCAGGCTTTGTGATGT                                                                                                                                      >  2:1135715/1‑35                                                                                                                   ATCCAAAAAACCGATCGCCTCAGGCTTTGTGATGT                                                                                                                                      >  2:1135600/1‑35                                                                                                                   ATCCAAAAAACCGATCGCCTCAGGCTTTGTGATGT                                                                                                                                      <  1:1135600/35‑1                                                                                                                                 TCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTGCCATCTTTTTTGATTAAGGACATTGATAGATAAAGTACTTGTGCGAGTCCGATAAGGTTGTAAATGTCGCCAACTA     >  2:590525/1‑150                                                                                                                                    CCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGCTTGGTTTTAATGGTGCCATCTTTTTTGCTTAAGGACATTGATAGATAAAGTACTTGTGCGAGTCCGATAAGGTTGTAAATGTCGCCAACTATTT  >  1:814580/1‑150                                                                                                                                    CCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTGCCATCTTTTTTGATTAAGGACATTGATAGATAAAGTACTTGTGCGAGTCCGATAAGGTTGTAAATGTCGCCAACTATTT  <  1:861466/150‑1                                                                                                                                                                                                                                                                                           TCTATCAATGTCCTTAATCAAAAAAGATGGCACCATTAAAACCAATCCGTATTGCAAGCTTAGATCAACACTATCATAAATACACATCACAAAGCCTGAGGCGAGCGGTTTCACATCCAAAAAACCGATCGCCTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2004781‑2004645 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcctcagGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTGCCATCTTTTTTGATTAAGGACATTGATAGATAAAGTACTTGTGCGAGTCCGATAAGGTTGTAAATGTCGCCAACTATTT  >  NC_002947/2004687‑2004830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.