| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2344206 | 51 (0.700) | 4 (0.060) | 4/234 | NT | 7.8% | coding (143/456 nt) | soxR | DNA‑binding transcriptional regulator |
| ? | NC_002947 | = 2344217 | 47 (0.680) | coding (132/456 nt) | soxR | DNA‑binding transcriptional regulator | |||||
AGGTCTTCGCGCCAGGCCGTGGACATCTCGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2344053‑2344206‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagcgCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGCGATCATCAAGGTAGCCCAGCGCACGGGAATTCCGCTTGAGGAAATCAAACAAGCCTTCAGCCGTTATGCCCCCAACAGCAAGCTCACGGCCGCACAATGGAGCGAGATGTCCAC < NC_002947/2344217‑2344071 AGGTCTTCGCGCCAGGCCGTGGACATCTCGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACC < 1:951188/150‑1 ATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGCCGCTATCCCTCGCTGGTGCTGCG < 1:1924408/113‑1 ATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGCCGCTATCCCTCGCTGGTGCTGCG > 2:1924408/1‑113 ATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGCCGCTATCCCTCGCTGGTG < 1:1061889/86‑1 ATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGCCGCTATCCCTCGCTGGTG > 2:1061889/1‑86 CAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGCGATCATCAAGGTAGCCCAGCGCACGGGAATTCCGCTTGAGGAAATCAAACAAGCCTTCAGCCGTTATGCCCCCAACAGCAAGCTCACGGCCGCACAATGGAGCGAGATGTCC < 1:1512997/150‑1 GCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGCGATCATCAAGGTAGCCCAGCGCACGGGAATTCCGCTTGAGGAAATCAAACAAGCCTTCAGCCGTTATGCCCCCAACAGCAAGCTCACGGCCGCACAATGGAGCGAGATGTCCAC < 1:585702/150‑1 AGGTCTTCGCGCCAGGCCGTGGACATCTCGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2344053‑2344206‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagcgCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGCGATCATCAAGGTAGCCCAGCGCACGGGAATTCCGCTTGAGGAAATCAAACAAGCCTTCAGCCGTTATGCCCCCAACAGCAAGCTCACGGCCGCACAATGGAGCGAGATGTCCAC < NC_002947/2344217‑2344071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |