New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2344206	51 (0.700)	4 (0.060)	4/234	NT	7.8%	coding (143/456 nt)	soxR	DNA‑binding transcriptional regulator
	?	NC_002947	= 2344217	47 (0.680)					coding (132/456 nt)	soxR	DNA‑binding transcriptional regulator

TCGCGCCAGGCCGTGGACATCTCGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCTGCCATATAT  >  NC_002947/2344059‑2344352                                                                                                                                                    |                                                                                                                                                    tCGCGCCAGGCCGTGGACATCTCGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAg                                                                                                                                                   <  1:714797/150‑1 (MQ=255)   gcgcCAGGCCGTGGACATCTCGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAggg                                                                                                                                                 >  1:88484/1‑150 (MQ=255)             gTGGACATCTCGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGcgc                                                                                                                                       <  1:585702‑M2/150‑4 (MQ=255)               ggACATCTCGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGcgctg                                                                                                                                     <  1:1512997‑M2/150‑6 (MQ=255)                  cATCTCGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGtt                                                                                                                                  <  1:146639/150‑1 (MQ=255)                      tcGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCa                                                                                                                              <  2:337422/150‑1 (MQ=255)                      tcGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCa                                                                                                                              <  1:955630/150‑1 (MQ=255)                       cGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAg                                                                                                                             <  2:1350984/150‑1 (MQ=255)                        gCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGAGAGCGGCGCTGGTTGCCAGc                                                                                                                            >  1:1512762/1‑150 (MQ=255)                             aTTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGc                                                                                                                       <  1:1865243/150‑1 (MQ=255)                             aTTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGc                                                                                                                       <  2:1787262/150‑1 (MQ=255)                                       cGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGc                                                                                                            <  2:585702/150‑1 (MQ=255)                                       cGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGc                                                                                                            <  1:1272924/150‑1 (MQ=255)                                        gTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCg                                                                                                           <  2:1457064/150‑1 (MQ=255)                                            gCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGTAGCACGAGCCAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCa                                                                                                       <  2:739463/150‑1 (MQ=255)                                             cTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAg                                                                                                      <  2:88484/150‑1 (MQ=255)                                             cTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGGTGCCAGCCGTGCGG‑ACGCTGGCGATCAg                                                                                                      >  1:1200212/1‑150 (MQ=255)                                                   gTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCtt                                                                                                <  1:583498/150‑1 (MQ=255)                                                       ggggCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGtt                                                                                            >  2:71198/1‑150 (MQ=255)                                                        gggCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGttt                                                                                           >  2:966309/1‑150 (MQ=255)                                                         ggCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTc                                                                                          <  1:966309/150‑1 (MQ=255)                                                            aTAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGccgctatccctcgctggtgctgcg                                                                                                                             <  1:1924408‑M1/113‑25 (MQ=255)                                                            aTAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGccgctatccctcgctggtgctgcg                                                                                                                             >  2:1924408‑M1/1‑89 (MQ=255)                                                                       aGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGc                                                                                                                                >  1:419328/1‑99 (MQ=255)                                                                       aGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGc                                                                                                                                <  2:419328/99‑1 (MQ=255)                                                                         gCTTGTTTGATGTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATTATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCa                                                                          <  1:815533/150‑1 (MQ=255)                                                                           ttGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGa                                                                        <  1:125487/150‑1 (MQ=255)                                                                              tttGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCACTTGGTTTCGTAGAAGTGCAGCGCAGacac                                                                     >  2:1156311/1‑150 (MQ=255)                                                                                  aTTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGccgctatccctcgctggtg                                                                                                                                  >  2:1061889‑M1/1‑67 (MQ=255)                                                                                  aTTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGccgctatccctcgctggtg                                                                                                                                  <  1:1061889‑M1/86‑20 (MQ=255)                                                                                       cTCAAGAGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCAcgcc                                                            >  2:1444399/1‑150 (MQ=255)                                                                                           aGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTCGAAGTGCAGCGCa                                                                          >  2:16460/1‑132 (MQ=255)                                                                                           aGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCa                                                                          <  1:16460/132‑1 (MQ=255)                                                                                           aGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTg                                                        <  2:1512997/150‑1 (MQ=255)                                                                                           aGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGAGAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTg                                                        >  2:749016/1‑150 (MQ=255)                                                                                             cGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTg                                                                                               <  1:1534316/109‑1 (MQ=255)                                                                                             cGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTg                                                                                               >  2:1534316/1‑109 (MQ=255)                                                                                                aaTTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCtt                                                   >  1:825101/1‑150 (MQ=255)                                                                                                   tCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGc                                                <  2:382471/150‑1 (MQ=255)                                                                                                      cGTGCGCTGGGCTACCTTGATGATCGGCAGGGTACGCAGCACCAGAGAGGGCTAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCAc                                             >  1:931843/1‑150 (MQ=255)                                                                                                             tGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGGAGCGCAGACACCGCCACGCAGCTGCGCTTTGCCACTTCAccc                                      >  2:1766241/1‑150 (MQ=255)                                                                                                                  tACCTTGATGATCGCCAGGGTACGCAGCACCCGCGAGGGATAGGGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCTCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGACGCGCTTGGCCGCTTCACCCACtgt                                 <  2:119622/150‑1 (MQ=255)                                                                                                                  tACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACtgt                                 <  1:1444399/150‑1 (MQ=255)                                                                                                                    ccTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGa                               <  1:1350903/150‑1 (MQ=255)                                                                                                                     cTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAg                              >  1:1119450/1‑150 (MQ=255)                                                                                                                     cTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAg                              >  1:192447/1‑150 (MQ=255)                                                                                                                           gatCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCg                        >  2:935520/1‑150 (MQ=255)                                                                                                                             tCGCCAGGGGACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑AAGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCgtg                      >  1:409493/1‑150 (MQ=255)                                                                                                                                 cAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGtgtt                  <  2:825101/150‑1 (MQ=255)                                                                                                                                       aCGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGc            <  2:1119450/150‑1 (MQ=255)                                                                                                                                       aCGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGc            >  1:1680451/1‑150 (MQ=255)                                                                                                                                        cGCAGCACCAGCGAGGGATAGCGGcgctggtgctgcgtaccctggcgatcatcaaggtagcccagcgcacgggaattccgcttgaggaaatcaaacaagccttcagccgttat                                                 >  2:1924408‑M2/1‑24 (MQ=255)                                                                                                                                        cGCAGCACCAGCGAGGGATAGCGGcgctggtgctgcgtaccctggcgatcatcaaggtagcccagcgcacgggaattccgcttgaggaaatcaaacaagccttcagccgttat                                                 <  1:1924408‑M2/113‑90 (MQ=255)                                                                                                                                        cGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACATCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCt           <  2:822652/150‑1 (MQ=255)                                                                                                                                         gcagcaCCAGCGAGGGATAGCGGCGCTGGTTGCCCGCGGTGGGGTGCTCCGGCG‑TTAGCCCCTTGGTTTCTCGGAAGTGCAGCGCAGACATCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCTg          >  1:822652/1‑150 (MQ=255)                                                                                                                                         gcagcaCCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCAc                                             <  1:1416425/115‑1 (MQ=255)                                                                                                                                         gcagcaCCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCAc                                             >  2:1416425/1‑115 (MQ=255)                                                                                                                                           agcaCCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTTCGG‑ACGCCGGACATTATCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCTGcc        <  1:1877501/150‑1 (MQ=255)                                                                                                                                            gcaCCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCTGCCa       <  2:192447/150‑1 (MQ=255)                                                                                                                                             caCCAGCGAGGGATAGCGGcgctggtgctgcgtaccctggcgatcatcaaggtagcccagcgcacgggaattccgcttgaggaaat                                                                       <  1:1061889‑M2/86‑68 (MQ=255)                                                                                                                                             caCCAGCGAGGGATAGCGGcgctggtgctgcgtaccctggcgatcatcaaggtagcccagcgcacgggaattccgcttgaggaaat                                                                       >  2:1061889‑M2/1‑19 (MQ=255)                                                                                                                                             caCCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAgcgc                                                                           <  2:247221/81‑1 (MQ=255)                                                                                                                                             caCCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAgcgc                                                                           >  1:247221/1‑81 (MQ=255)                                                                                                                                                cAGCGccgctatccctcgctggtgctgcgtaccctggcgatcatcaaggtagcccagcgcacgggaattccgcttgaggaaatcaaacaagccttcagccgttatgcccccaacagcaagctcacggccgcacaatggagcgagatgtcc    <  1:1512997‑M1/150‑146 (MQ=255)                                                                                                                                                  gcgccgctatccctcgctggtgctgcgtaccctggcgatcatcaaggtagcccagcgcacgggaattccgcttgaggaaatcaaacaagccttcagccgttatgcccccaacagcaagctcacggccgcacaatggagcgagatgtccac  <  1:585702‑M1/150‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TCGCGCCAGGCCGTGGACATCTCGCTCCATTGTGCGGCCGTGAGCTTGCTGTTGGGGGCATAACGGCTGAAGGCTTGTTTGATTTCCTCAAGCGGAATTCCCGTGCGCTGGGCTACCTTGATGATCGCCAGGGTACGCAGCACCAGCGAGGGATAGCGGCGCTGGTTGCCAGCCGTGCGG‑ACGCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCTGCCATATAT  >  NC_002947/2344059‑2344352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.