| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2577167 | 84 (1.150) | 8 (0.120) | 5/226 | NT | 8.7% | coding (1271/1776 nt) | PP_2259 | sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | = 2577215 | 92 (1.380) | coding (1223/1776 nt) | PP_2259 | sigma‑54 dependent transcriptional regulator | |||||
GTCAGCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2577010‑2577167‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccactgcccaCCCAGGCCCGCCTGCTGCGCGTACTGCA‑GTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGACCTG < NC_002947/2577215‑2577067 GTCAGCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTCGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCC < 1:113226/150‑1GTCAGCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCC > 2:428761/1‑150 TCAGCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCA < 1:277582/150‑1 TCAGCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCA < 2:842556/150‑1 GCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCAAGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTG > 1:1690150/1‑150 GTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCA > 1:1055708/1‑150 CTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCAGC‑‑GGCCCGCCTGCTGCGCGTACTGCA‑GTCGCGCAGCATCCAGCCGCTGGGCAGTG < 2:1656193/150‑1 GGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTTGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCA‑GTCGCGCAGCATCCAGCCGCTGGGCAGTG < 1:1059267/150‑1 GGCGAAAGCGCACGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCA‑GTCGCGCAGCATCCAGCCGCTGGGCAGTG < 1:1298521/150‑1 GCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTTGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCA‑GTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGT < 2:1445394/150‑1 ATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCA‑GTCGCGCAGCATCCAGCCGCT < 1:1783049/102‑1 ATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCA‑GTCGCGCAGCATCCAGCCGCT > 2:1783049/1‑102 TCGCCGACACCACGCGGATATCCACCGGCACCGGTTTGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCA‑GTCGCGCAGCATCCAGCCGCTGGGCAGTG > 1:1719912/1‑105 TCGCCGACACCACGCGGATATCCACCGGCACCGGTTTGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCA‑GTCGCGCAGCATCCAGCCGCTGGGCAGTG < 2:1719912/105‑1 ACTGCCCACCCAGGCCCGCCTGCTGCGCG‑ACTGCAGGACGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCA < 1:254207/150‑1 CCCACCCAGGCCCGCCTGCTGCGCGTACTGCA‑GTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGAC > 1:801982/1‑150 CCCACCCAGGCCCGCCTGCTGCGCGTACTGCA‑GTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAG < 1:1769933/101‑1 CCCACCCAGGCCCGCCTGCTGCGCGTACTGCA‑GTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAG > 2:1769933/1‑101 ACCCAGGCCCGCCTGCTGCGCGTACTGCA‑GTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGACCTG < 1:844604/150‑1 GTCAGCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2577010‑2577167‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccactgcccaCCCAGGCCCGCCTGCTGCGCGTACTGCA‑GTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGACCTG < NC_002947/2577215‑2577067 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |