New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3059570 =	59 (0.810)	4 (0.060)	4/234	NT	7.2%	coding (806/1275 nt)	PP_2671	sensor histidine kinase
	?	NC_002947	3059604 =	47 (0.680)					coding (840/1275 nt)	PP_2671	sensor histidine kinase

CCGGCATTCGATGCCCTGGCTGGCCTGCCACTGGCTCACCAACAGCCCGAAGGCCTCGGCCAGCGGCATGTAGTGCAGCGCCACCGGATACAAGTTGTGCACCAGCGCGCGAAAACCTTGCTGCAGGCGCTCGCAGTTGAGTTCAAGGGCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3059724‑3059570 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgcaGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTG  >  NC_002947/3059604‑3059696                                                                                                                                                                                                                                                          CCGGCATTCGATGCCCTGGCTGGCCTGCCACTGGCTCACCAACAGCCCGAAGGCCTCGGCCAGCGGCATGTAGTGCAGCGCCACCGGATACAAGTTGTGCACCAGCGCGCGAAAACCTTGCTGCAGGCGCTCGCAGTTGAGTTCAAGGGC                                                                                                    >  2:1693970/1‑150   GGCATTCGATGCCCTGGCTGGCCTGCCACTGGCTCACCAACAGCCCGAAGGCCTCGGCCAGCGGCATGTAGTGCAGCGCCACCGGATACAAGTTGTGCACCAGCGCGCGAAAACCTTGCTGCAGGCGCTCGCAGTTGAGTTCAAGGGCCT                                                                                                  <  2:92876/150‑1                                                                                                                     CTTGCTGCAGGCGCTCGCAGTTGAGTTCAAGGGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAG                            <  1:1536278/106‑1                                                                                                                     CTTGCTGCAGGCGCTCGCAGTTGAGTTCAAGGGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAG                            >  2:1536278/1‑106                                                                                                                          TGCAGGCGCTCGCAGTTGAGTTCAAGGGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTG  >  1:1799055/1‑127                                                                                                                          TGCAGGCGCTCGCAGTTGAGTTCAAGGGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTG  <  2:1799055/127‑1                                                                                                                                                                                                                                                          CCGGCATTCGATGCCCTGGCTGGCCTGCCACTGGCTCACCAACAGCCCGAAGGCCTCGGCCAGCGGCATGTAGTGCAGCGCCACCGGATACAAGTTGTGCACCAGCGCGCGAAAACCTTGCTGCAGGCGCTCGCAGTTGAGTTCAAGGGCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3059724‑3059570 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgcaGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTG  >  NC_002947/3059604‑3059696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.