New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3059570 =59 (0.810)4 (0.060) 4/234 NT 7.2% coding (806/1275 nt) PP_2671 sensor histidine kinase
?NC_002947 3059604 = 47 (0.680)coding (840/1275 nt) PP_2671 sensor histidine kinase

AGCTGGCGCAGACCCTGCACGATGATCTTGGGCAATACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATCGAATGCCGGCTGCGGGTTGGCGAGCACTT  >  NC_002947/3059459‑3059744
                                                                                                                                                 |                                                                                                                                            
aGCTGGCGCAGACCCTGCACGATGATCTTGGGCAATACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAg                                                                                                                                          >  2:736587/1‑150 (MQ=255)
aGCTGGCGCAGACCCTGCACGATGATCTTGGGCAATACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAg                                                                                                                                          >  1:1346172/1‑150 (MQ=255)
  cTGGCGCAGACCCTGCACGATGATCTTGGGCAATACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGt                                                                                                                                        <  2:39130/150‑1 (MQ=255)
  cTGGCGCAGACCCTGCACGATGATCTTGGGCAATACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGt                                                                                                                                        >  2:1818393/1‑150 (MQ=255)
     gcgcAGACCCTGCACGATGATCTAGGGCAATACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGtttt                                                                                                                                     <  2:1771176/150‑1 (MQ=255)
      cgcAGACCCTGCACGATGATCTTGGGCAATACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTc                                                                                                                                    <  1:1649221/150‑1 (MQ=255)
            cccTGCACGATGATCTTGGGCAATACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCgcgcgc                                                                                                                              <  2:1346172/150‑1 (MQ=255)
                gCACGATGATCTTGGGCAATACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGt                                                                                                                          <  1:1818393/150‑1 (MQ=255)
                         tCTTGGGCAATACCTGGCAGGCATGCGTGCCCAGCTATGCCTACTGCATATGGTAGCAGAACAGCCGGAAATGGTGACGCAGACGGTGCACGCCCTTGAACTCAACTGCGTGCGCCTGCAGCAAGATTTTCGCGCGCTGGTGCACAACtt                                                                                                                 <  2:683128/150‑1 (MQ=255)
                                  aTACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGt                                                                                                        >  1:1871974/1‑150 (MQ=255)
                                   tACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTg                                                                                                       >  2:455993/1‑150 (MQ=255)
                                   tACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTg                                                                                                       <  2:452591/150‑1 (MQ=255)
                                   tACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTg                                                                                                       <  2:1338268/150‑1 (MQ=255)
                                   tACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTg                                                                                                       <  2:1803146/150‑1 (MQ=255)
                                   ctccTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTg                                                                                                       <  1:700778/148‑1 (MQ=255)
                                      cTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGt                                                                                                                          >  1:1603883/1‑128 (MQ=255)
                                      cTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGt                                                                                                                          <  2:1603883/128‑1 (MQ=255)
                                            ctcggccagcggcatgtagtgcagcgccaccggatacaagttgtgcaccagcgcgcgaaaaccttgcTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAg                                                                                                                                          <  1:1536278‑M1/39‑1 (MQ=255)
                                            ctcggccagcggcatgtagtgcagcgccaccggatacaagttgtgcaccagcgcgcgaaaaccttgcTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAg                                                                                                                                          >  2:1536278‑M1/68‑106 (MQ=255)
                                               aTGCGTGCCCAGCCATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTAc                                                                                           >  2:1275861/1‑150 (MQ=255)
                                                           ccaTGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGcc                                                                               <  1:1275861/148‑1 (MQ=255)
                                                               gCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAgg                                                                           >  1:1693970/1‑150 (MQ=255)
                                                                ccTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGc                                                                          >  1:1431462/1‑150 (MQ=255)
                                                                   gctgcGTATCGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCtt                                                                       <  2:601778/150‑1 (MQ=255)
                                                                    ctgcGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTc                                                                      <  2:1871974/150‑1 (MQ=255)
                                                                     tgcGTATGGTGGCCGAACAGCCGGAAATGGTGGCGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCg                                                                     <  2:961701/150‑1 (MQ=255)
                                                                        gTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAACAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGc                                                                  <  1:623128/150‑1 (MQ=255)
                                                                            ggtggCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGtt                                                              <  1:1382280/150‑1 (MQ=255)
                                                                                gCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGACGAGGCCTTCGGGCTGTTGGTg                                                          >  1:1527531/1‑150 (MQ=255)
                                                                                  cGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAg                                                        >  1:502551/1‑150 (MQ=255)
                                                                                   gAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTc                                                                      <  2:1487659/135‑1 (MQ=255)
                                                                                   gAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTc                                                                      >  1:1487659/1‑135 (MQ=255)
                                                                                   gAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGc                                                       >  1:1803784/1‑150 (MQ=255)
                                                                                   gAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTAACGGCCGGTGGCCGAGGCCTTCGGGCTGTTGGTGAGc                                                       >  2:1609303/1‑150 (MQ=255)
                                                                                      cAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAg                                                                                                                                          <  1:232093/64‑1 (MQ=255)
                                                                                      cAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAg                                                                                                                                          >  2:232093/1‑64 (MQ=255)
                                                                                        gCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGTTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTg                                                          <  1:438348/142‑1 (MQ=255)
                                                                                        gCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGTTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTg                                                          >  2:438348/1‑142 (MQ=255)
                                                                                           ggAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCa                                               <  1:1699746/150‑1 (MQ=255)
                                                                                            gAAATGGTGACGCAGATGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAg                                              <  1:1327090/150‑1 (MQ=255)
                                                                                                     aCGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCAGTCGCGTTCGGGCTGTTGGTGAGCCAGTGGCAGGccagccag                                     >  1:1070078/1‑150 (MQ=255)
                                                                                                      cGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAgg                                    <  2:553414/150‑1 (MQ=255)
                                                                                                      cGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGCGCTGTCGGTGCGCCAGTGGCCGGccagccagc                                    >  2:1642772/1‑149 (MQ=255)
                                                                                                       gCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAggg                                   >  2:1576651/1‑150 (MQ=255)
                                                                                                          cttgctgcaggcgctcgcagttgagttcaagggcctgcaGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAg                                                                            >  2:1536278‑M2/40‑106 (MQ=255)
                                                                                                          cttgctgcaggcgctcgcagttgagttcaagggcctgcaGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAg                                                                            <  1:1536278‑M2/67‑1 (MQ=255)
                                                                                                           aCGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATc                               <  1:1224968/150‑1 (MQ=255)
                                                                                                           aCGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGACGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATc                               <  2:1527531/150‑1 (MQ=255)
                                                                                                               tgcaggcgctcgcagttgagttcaagggcctgcaGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTg                                                  >  1:1799055‑M2/35‑127 (MQ=255)
                                                                                                               tgcaggcgctcgcagttgagttcaagggcctgcaGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTg                                                  <  2:1799055‑M2/93‑1 (MQ=255)
                                                                                                                  AGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATCGAATGcc                        <  2:92876‑M1/150‑1 (MQ=255)
                                                                                                                    GCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATCGAATGCCgg                      >  2:1693970‑M1/1‑150 (MQ=255)
                                                                                                                        ttGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATCGAATGCCGGCTGc                  <  2:1431462/150‑1 (MQ=255)
                                                                                                                              tCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATCGAATGCCGGCTGCGGGTTg            >  1:1430215/1‑150 (MQ=255)
                                                                                                                              tCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATCGAATGCCGGCTGCGGGTTg            >  2:1601696/1‑150 (MQ=255)
                                                                                                                                aaCTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATCGAATGCCGGCTGCGGGTTGGc          <  2:681576/150‑1 (MQ=255)
                                                                                                                                 aCTGCGAGCTCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATCGAATGCCGGCTGCGGGTTGGCg         >  2:520136/1‑150 (MQ=255)
                                                                                                                                 aCTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATCGAATGCCGGCTGCGGGTTGGCg         >  2:4696/1‑150 (MQ=255)
                                                                                                                                  cTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATCGAATGCCGGCTGCGGGTTGGCGa        >  2:1690641/1‑150 (MQ=255)
                                                                                                                                        gcgcCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATCGAATGCCGGCTGCGGGTTGGCGAGCACtt  >  2:198579/1‑150 (MQ=255)
                                                                                                                                        gcgcCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCAGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATCGAATGCCGGCTGCGGGTTGGCGAGCACtt  >  1:1494659/1‑150 (MQ=255)
                                                                                                                                                 |                                                                                                                                            
AGCTGGCGCAGACCCTGCACGATGATCTTGGGCAATACCTGGCAGGCATGCGTGCCCAGCTATGCCTGCTGCGTATGGTGGCCGAACAGCCGGAAATGGTGACGCAGACGGTGCAGGCCCTTGAACTCAACTGCGAGCGCCTGCAGCAAGGTTTTCGCGCGCTGGTGCACAACTTGTATCCGGTGGCGCTGCACTACATGCCGCTGGCCGAGGCCTTCGGGCTGTTGGTGAGCCAGTGGCAGGCCAGCCAGGGCATCGAATGCCGGCTGCGGGTTGGCGAGCACTT  >  NC_002947/3059459‑3059744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.