| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3522813 | 65 (0.890) | 5 (0.070) | 4/242 | NT | 6.7% | intergenic (+557/‑140) | PP_5584/PP_3113 | hypothetical protein/transposase |
| ? | NC_002947 | = 3522862 | 76 (1.070) | intergenic (+606/‑91) | PP_5584/PP_3113 | hypothetical protein/transposase | |||||
CCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3522708‑3522813‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAATGCCA‑‑GGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCCAGCACTTTGAACATGTGCTGGTGGCCGAA < NC_002947/3522862‑3522715 CCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCGGCCGCGGTGCGTTGGTCACCACGCACATGCC < 1:24475/106‑1CCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCGGCCGCGGTGCGTTGGTCACCACGCACATGCC > 2:24475/1‑106 TCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCA‑‑GGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGC < 1:140271/150‑1 AGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCAATGCCA‑‑GGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTG < 2:428268/150‑1 CACATGTTCAAAGTGCTGGCCCAGACCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTG < 1:1519583/150‑1 GCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGC < 1:347599/68‑1 GCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGC > 2:347599/1‑68 TTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCAATGCCA‑‑GGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGC < 1:1741379/99‑1 TTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCAATGCCA‑‑GGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGC > 2:1741379/1‑99 CCAATGCCA‑‑GGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCCAGCACTTTGAACATGTGCTGGTGGCCGAA > 2:1528152/1‑150 CCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3522708‑3522813‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAATGCCA‑‑GGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCCAGCACTTTGAACATGTGCTGGTGGCCGAA < NC_002947/3522862‑3522715 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |