New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3522813	65 (0.890)	5 (0.070)	4/242	NT	6.7%	intergenic (+557/‑140)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	= 3522862	76 (1.070)					intergenic (+606/‑91)	PP_5584/PP_3113	hypothetical protein/transposase

TCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGCCCGTCGACTT  >  NC_002947/3522713‑3523011                                                                                                                                                        |                                                                                                                                                      tctTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCAtt                                                                                                                                                       >  1:1220356/1‑150 (MQ=255)   ttCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTgg                                                                                                                                                     >  2:1528152‑M2/1‑148 (MQ=255)      ggCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATTCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTc                                                                                                                                                  <  2:1257088/150‑1 (MQ=255)      ggCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTc                                                                                                                                                  <  2:6536/150‑1 (MQ=255)          accaGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTaa                                                                                                                                              <  2:1535747/150‑1 (MQ=255)              gCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGt                                                                                                                                                <  1:1940575/144‑1 (MQ=255)              gCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGt                                                                                                                                                >  2:1940575/1‑144 (MQ=255)              gCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAgcgc                                                                                                                                          >  2:48589/1‑150 (MQ=255)               cacaTGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCt                                                                                                                                         <  2:1274589/150‑1 (MQ=255)                 caTGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTcc                                                                                                                                       <  1:54048/150‑1 (MQ=255)                  aTGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCa                                                                                                                                      >  1:122941/1‑150 (MQ=255)                    gTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATg                                                                                                                                    >  1:261691/1‑150 (MQ=255)                       cAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAAc                                                                                                                                 <  2:168721/150‑1 (MQ=255)                         aaGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAAccc                                                                                                                               >  2:435527/1‑150 (MQ=255)                          aGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAAcccc                                                                                                                              <  2:261691/150‑1 (MQ=255)                            tGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCcac                                                                                                                            <  2:1220356/150‑1 (MQ=255)                                ggcccaggcccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTc                                                                                                                        <  2:1939025/150‑1 (MQ=255)                                   ccaggcccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGCCACAACGCAAGTGAAGATGCCATGGGCTTGGGCATGTTCCAGCAGGCGCAACAGGCC‑‑TGCCATTGGCGCGTAAGCGCTCCATGAACCCCACATTCaaa                                                                                                                     <  2:220734/150‑1 (MQ=255)                                    caggcccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAg                                                                                                                    <  2:1761481/150‑1 (MQ=255)                                         ccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAAc                                                                                                                                 >  2:303009/1‑132 (MQ=255)                                         ccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAAc                                                                                                                                 <  1:303009/132‑1 (MQ=255)                                         ccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCtt                                                                                                               >  2:689966/1‑150 (MQ=255)                                            tGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTAcc                                                                                                            >  1:1243709/1‑150 (MQ=255)                                                    aGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATcccc                                                                                                    <  2:122941/150‑1 (MQ=255)                                                     gCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCg                                                                                                   >  1:1142350/1‑150 (MQ=255)                                                       aTGTGCTCGGCGTTCAGCCGCGGTACGTTGGTCACAACGCACATGCCGATGCCATTGGCCGGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGAt                                                                                                 >  2:118200/1‑150 (MQ=255)                                                           gCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCGATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCtg                                                                                             <  1:462351/150‑1 (MQ=255)                                                           gCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCtg                                                                                             <  1:48589/150‑1 (MQ=255)                                                             tCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTc                                                                                                                                        >  1:187630/1‑105 (MQ=255)                                                             tCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTc                                                                                                                                        <  2:187630/105‑1 (MQ=255)                                                             tCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCtgtg                                                                                           >  2:587523/1‑150 (MQ=255)                                                                gCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTcc                                                                                                                                       <  1:862131/103‑1 (MQ=255)                                                                gCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTcc                                                                                                                                       >  2:862131/1‑103 (MQ=255)                                                                gCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTc                                                                                        <  1:180914/150‑1 (MQ=255)                                                                      aGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAtt                                                                                  <  1:1119966/150‑1 (MQ=255)                                                                       gCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAttt                                                                                 >  1:1793378/1‑150 (MQ=255)                                                                         cgcgGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAtttct                                                                               <  1:381888/150‑1 (MQ=255)                                                                          gcgGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAtttctt                                                                              >  2:1613273/1‑150 (MQ=255)                                                                           cgGTGCGTTCTTCACCACGCACATGCCGATGCCATGGGCCTAGGCATACGCGAGCATGCGCAACAGGCC‑‑TGGTTCTGCCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAtttcttt                                                                             <  1:435527/150‑1 (MQ=21)                                                                             gTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATttctttct                                                                           <  2:506332/150‑1 (MQ=255)                                                                             gTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATttctttct                                                                           >  2:1590080/1‑150 (MQ=255)                                                                                cGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGGGCTCCCGATTTCTTTCTGGa                                                                        <  2:1142350/150‑1 (MQ=255)                                                                                     gTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCaaa                                                                                                                     <  1:687407/100‑1 (MQ=255)                                                                                     gTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCaaa                                                                                                                     >  2:687407/1‑100 (MQ=255)                                                                                      tCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGc                                                                  <  1:277217/150‑1 (MQ=255)                                                                                        accacGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCg                                                                <  2:780821/150‑1 (MQ=255)                                                                                          cacGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCCATGGCATCggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggtctgggccagcactttgaacatgtg                                                                <  1:1519583‑M2/150‑88 (MQ=255)                                                                                          cacGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgggccagcactttgaacatgtgct                                                              <  2:428268‑M2/150‑90 (MQ=255)                                                                                               acaTGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCatga                                                         >  1:1242365/1‑150 (MQ=255)                                                                                                caTGCCGATGGAATGGGCCTGGGCATGCTACAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCTCTCCATGAACCCCACACTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGCGCTAGCCGACCatgat                                                        <  2:179708/150‑1 (MQ=21)                                                                                                 aTGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCatgatg                                                       <  1:1590080/150‑1 (MQ=255)                                                                                                   gCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCg                                                     >  2:1647056/1‑150 (MQ=255)                                                                                                   gCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATCggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgggccagcactttgaacatgtgctggtggccga                                                     <  1:140271‑M2/150‑99 (MQ=255)                                                                                                    ccGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCa                                                                                                                       >  2:253185/1‑83 (MQ=255)                                                                                                    ccGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCa                                                                                                                       <  1:253185/83‑1 (MQ=255)                                                                                                     cGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAg                                                                       >  1:789379/1‑130 (MQ=255)                                                                                                     cGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAg                                                                       <  2:789379/130‑1 (MQ=255)                                                                                                     cGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGAc                                                   <  1:689966/150‑1 (MQ=255)                                                                                                         gCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaa                                                                                                  <  1:1741379‑M2/99‑54 (MQ=255)                                                                                                         gCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaa                                                                                                  >  2:1741379‑M2/1‑46 (MQ=255)                                                                                                            aTGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGc                                            >  1:384937/1‑150 (MQ=255)                                                                                                            aTGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGc                                            <  1:1647056/150‑1 (MQ=255)                                                                                                            aTGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGc                                            >  1:796491/1‑150 (MQ=255)                                                                                                             tGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGcc                                           >  2:1316349/1‑150 (MQ=255)                                                                                                                 ccTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAg                                       >  1:1384245/1‑150 (MQ=255)                                                                                                                       cATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGaaa                                 <  2:1243709/150‑1 (MQ=255)                                                                                                                        aTGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTc                                     <  1:1135573/145‑1 (MQ=255)                                                                                                                        aTGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTc                                     >  2:1135573/1‑145 (MQ=255)                                                                                                                         tGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGaaaaa                               <  2:1793378/150‑1 (MQ=255)                                                                                                                            tCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGa                                                                        <  1:604609/106‑1 (MQ=255)                                                                                                                            tCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGa                                                                        >  2:604609/1‑106 (MQ=255)                                                                                                                              cagcagGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCtgt                                                                                            <  2:1669125/84‑1 (MQ=255)                                                                                                                              cagcagGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCtgt                                                                                            >  1:1669125/1‑84 (MQ=255)                                                                                                                              cagcagGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTa                          >  1:1640710/1‑150 (MQ=255)                                                                                                                                     cgcAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTAc                   <  1:1823780/150‑1 (MQ=255)                                                                                                                                      gcAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCtgt                                                                                            >  1:1657808/1‑76 (MQ=255)                                                                                                                                      gcAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCtgt                                                                                            <  2:1657808/76‑1 (MQ=255)                                                                                                                                       cAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACAAAAAAAAAAAAAAAGTGTACCTCTAccc                 <  2:1242365/150‑1 (MQ=14)                                                                                                                                           aGGCC‑‑TGGCATTGGCTCGTAAGCGGCCCATTAACCCCACTTTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACACCagc             <  1:1036853/150‑3 (MQ=14)                                                                                                                                               c‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGCCCg         >  1:1367889/1‑150 (MQ=40)                                                                                                                                                  tGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGc                                                                  >  1:1630963/1‑92 (MQ=255)                                                                                                                                                  tGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGc                                                                  <  2:1630963/92‑1 (MQ=255)                                                                                                                                                  tGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCatgat                                                        <  1:1136377/102‑1 (MQ=255)                                                                                                                                                  tGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCatgat                                                        >  2:1136377/1‑102 (MQ=255)                                                                                                                                                  tGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGccc          <  1:1310849/148‑1 (MQ=39)                                                                                                                                                  tGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGccc          >  2:1310849/1‑148 (MQ=39)                                                                                                                                                  tGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGCCCGt        >  2:1872207/1‑150 (MQ=39)                                                                                                                                                        tGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGCCCGTCGACtt  <  1:587523/150‑1 (MQ=34)                                                                                                                                                        |                                                                                                                                                      TCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCC‑‑TGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGCCCGTCGACTT  >  NC_002947/3522713‑3523011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.