New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3543953 =	60 (0.820)	6 (0.090)	6/234	NT	9.8%	coding (1525/2607 nt)	PP_3130	hypothetical protein
	?	NC_002947	3543976 =	54 (0.780)					coding (1502/2607 nt)	PP_3130	hypothetical protein

GCTACATGACGGCGGCCAAGGCCTTTGCCAAACAGTTTGACCTACCCGCCGACCTGACCTGGCGTGCCTGGGAGCATGGGCCGTCGAAGCTGTTGCTCAACGAGCTGGAACAACGCTTCAATGCCGACATGATCGCCCAC‑TTGCGCAGCGTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3544108‑3543953 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggcgATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCATGCTCCCAGGCACGCCAGGTCAGGTCGGCGGGTAGGTCAAACTGTTTGGCAAAGGCCTTGGCCGCCGTCATGTAGCGCGCACTGTGGCGGG  >  NC_002947/3543976‑3544123                                                                                                                                                                                                                                                                                                                   GCTACATGACGGCGGCCAAGGCCTTTGCCAAACAGTTTGACCTACCCGCCGACCTGACCTGGCGTGCCTGGGAGCATGGGCCGTCGAAGCTGTTGCTCAACGAGCTGGAACAACGCTTCAATGCCGACATGATCGCCCAC‑TTGCGCAGCG                                                                                                                                                            >  2:1489446/1‑150    ACATGACGGCGGCCAAGGCATTTGCCAAACAGTTTGACCTACCCGCCGACCTGACCTGGCGTGCCTGGGAGCATGGGCCGTCGAAGCTGTTGCTCAACGAGCTGGAACAACGCTTCAATGCCGACATGATCGCCCAC‑TTGCGCAGCGTGG                                                                                                                                                         <  2:77757/150‑1                               AACAGTTTGACCTACCCGCCGACCTGACCTGGCGTGCCTGGGAGCATGGGCCGTCGAAGCTGTTGCTCAACGAGCTGGAACAACGCTTCAATGCCGACATGATCGCCCACGCTGCGCA‑AGTGGGCGATCATGTCGGCATTGAAG                                                                                                                                    <  1:1821312/144‑1                               AACAGTTTGACCTACCCGCCGACCTGACCTGGCGTGCCTGGGAGCATGGGCCGTCGAAGCTGTTGCTCAACGAGCTGGAACAACGCTTCAATGCCGACATGATCGCCCACGCTGCGCA‑AGTGGGCGATCATGTCGGCATTGAAG                                                                                                                                    >  2:1821312/1‑144                                                                                                                                    ATCGCCCAC‑TTGCGCAGCGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGA                                                                                                                 <  1:1086790/62‑1                                                                                                                                    ATCGCCCAC‑TTGCGCAGCGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGA                                                                                                                 >  2:1086790/1‑62                                                                                                                                        CCCAC‑TTGCGCAGCGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCATGCTCCCAGGCACGCCAGGTCAGGTCGGCGGGTAGGTCAAACTGTTTGGCAAAGGCCTTG                                 <  1:501299/138‑1                                                                                                                                        CCCAC‑TTGCGCAGCGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCATGCTCCCAGGCACGCCAGGTCAGGTCGGCGGGTAGGTCAAACTGTTTGGCAAAGGCCTTG                                 >  2:501299/1‑138                                                                                                                                                          GGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCATGCTCCCAGGCACGCCAGGTCAGGTCGGCGGGTAGGTCAAACTGTTTGGCAAAGGCCTTGGCCGCCGTCATGTAGCGCGCACTGTGGCG    <  1:98488/150‑1                                                                                                                                                            CGATCATGTCGGCATTGAAGCGCTGTTCCAGCTCGTTGAGTAACAGCTTCGACGGCCCATGCTCCCAGGCACGCCAGGTCAGGTCTGCGGGTAGGTCAAACTGTTTGGCAAAGGCCTTGGCCGCCGTCATGTAGCGCGCACTGTGGCGGG  <  1:981815/150‑1                                                                                                                                                                                                                                                                                                                   GCTACATGACGGCGGCCAAGGCCTTTGCCAAACAGTTTGACCTACCCGCCGACCTGACCTGGCGTGCCTGGGAGCATGGGCCGTCGAAGCTGTTGCTCAACGAGCTGGAACAACGCTTCAATGCCGACATGATCGCCCAC‑TTGCGCAGCGTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3544108‑3543953 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggcgATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCATGCTCCCAGGCACGCCAGGTCAGGTCGGCGGGTAGGTCAAACTGTTTGGCAAAGGCCTTGGCCGCCGTCATGTAGCGCGCACTGTGGCGGG  >  NC_002947/3543976‑3544123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.