| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3571891 | 44 (0.600) | 4 (0.060) | 4/236 | NT | 8.4% | intergenic (+10/‑117) | yneJ/PP_3153 | LysR family DNA‑binding transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 3571910 | 45 (0.650) | intergenic (+29/‑98) | yneJ/PP_3153 | LysR family DNA‑binding transcriptional regulator/hypothetical protein | |||||
TGCCCGGGTGCAGCACCGTCAGCGCCTGGCCAATGTCGGAGGACTTCCGCTATCTGAAAACCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3571739‑3571891‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcactTCAGATAATCAGGTTATCGAGTGAAAACATCAGCTTGCGCGGCCTTCTTCAAGCAACTTCACGAACATGCTCAAACTGCGCGAGACCGTACCTCGTCGCCATACCAGCCAGGTTTTCAGATAGCGGAAGTCCTCCGACATTGGCCAGGC < NC_002947/3571910‑3571762 TGCCCGGGTGCAGCACCGTCAGCGCCTGGCCAATGTCGGAGGACTTCCGCTATCTGAAAACCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTC > 2:1879164/1‑150 GGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTTCAGATAATCAGGTTATCGAGTGAAAACATCAGC < 1:57369/107‑1 GGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTTCAGATAATCAGGTTATCGAGTGAAAACATCAGC > 2:57369/1‑107 GTGAAGTTGCTTGAAGAGGGCCGCGCAAGCTGATGTTTTCACTTCAGATAATCAGGTTATCGAGTGAAAACATCA > 1:1418648/1‑75 GTGAAGTTGCTTGAAGAGGGCCGCGCAAGCTGATGTTTTCACTTCAGATAATCAGGTTATCGAGTGAAAACATCA < 2:1418648/75‑1 CACTTCAGATAATCAGGTTATCGAGTGAAAACATCAGCTTGCGCGGCCTTCTTCAAGCAACTTCACGAACATGCTCAAACTGCGCGAGACCGTACCTCGTCGCCATACGAGCCAGGTTTTCAGATAGCGGAA > 2:1324450/1‑132 CACTTCAGATAATCAGGTTATCGAGTGAAAACATCAGCTTGCGCGGCCTTCTTCAAGCAACTTCACGAACATGCTCAAACTGCGCGAGACCGTACCTCGTCGCCATACCAGCCAGGTTTTCAGATAGCGGAA < 1:1324450/132‑1 ACTTCAGATAATCAGGTTATCGAGTGAAAACATCAGCTTGCGCGGCCTTCTTCAAGCAACTTCACGAACATGCTCAAACTGCGCGA > 1:1598985/1‑86 ACTTCAGATAATCAGGTTATCGAGTGAAAACATCAGCTTGCGCGGCCTTCTTCAAGCAACTTCACGAACATGCTCAAACTGCGCGA < 2:1598985/86‑1 CTTCAGATAATCAGGTTATCGAGTGAAAACATCAGCTTGCGCGGCCTTCTTCAAGCAACTTCACGAACATGCTCAAACTGCGCGAGACCGTACCTCGTCGCCATACCAGCCAGGTTTTCAGATAGCGGAAGTCCTCCGACATTGGCCAGG > 2:881261/1‑150 TTCAGATAATCAGGTTATCGAGTGAAAACATCAGCTTGCGCGGCCTTCTTCAAGCAACTTCACGAACATGCTCAAACTGCGCGAGACCGTACCTCGTCGAACTCCACGACCGCTAAGCTGATATCGGAAGTCCTCCGACATTGGCCAGGC > 1:1398380/1‑150 TGCCCGGGTGCAGCACCGTCAGCGCCTGGCCAATGTCGGAGGACTTCCGCTATCTGAAAACCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3571739‑3571891‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcactTCAGATAATCAGGTTATCGAGTGAAAACATCAGCTTGCGCGGCCTTCTTCAAGCAACTTCACGAACATGCTCAAACTGCGCGAGACCGTACCTCGTCGCCATACCAGCCAGGTTTTCAGATAGCGGAAGTCCTCCGACATTGGCCAGGC < NC_002947/3571910‑3571762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |