New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3571891	44 (0.600)	4 (0.060)	4/236	NT	8.4%	intergenic (+10/‑117)	yneJ/PP_3153	LysR family DNA‑binding transcriptional regulator/hypothetical protein
	?	NC_002947	= 3571910	45 (0.650)					intergenic (+29/‑98)	yneJ/PP_3153	LysR family DNA‑binding transcriptional regulator/hypothetical protein

GCCTGGCCAATGTCGGAGGACTTCCGCTATCTGAAAACCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAACCATCACTATGCGCTCGGCGCTGCCTTGCTGATCACCCTGG  >  NC_002947/3571762‑3572056                                                                                                                                                     |                                                                                                                                                   gCCTGGCCAATGTCGGAGGACTTCCGATATCAGCTTAGCGGTCGTGGAGTTCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAa                                                                                                                                                   >  1:1398380‑M2/1‑149 (MQ=255)  ccTGGCCAATGTCGGAGGACTTCCGCTATCTGAAAACCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAag                                                                                                                                                  >  2:881261‑M2/1‑148 (MQ=255)                      ttCCGCTATCTGAAAACCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAagtg                                                                                                                                                <  1:1324450‑M2/132‑5 (MQ=255)                      ttCCGCTATCTGAAAACCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGAcc                                                                                                                              >  2:782903/1‑150 (MQ=255)                      ttCCGCTATCTGAAAACCTGGCTCGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAagtg                                                                                                                                                >  2:1324450‑M2/1‑128 (MQ=255)                       tCCGCTATCTGAAAACCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCa                                                                                                                             <  1:1634519/150‑1 (MQ=255)                       tCCGCTATCTGAAAACCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTCGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCa                                                                                                                             >  2:1689135/1‑150 (MQ=255)                        ccGCTATCTGAAAACCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAg                                                                                                                            <  1:1355783/150‑1 (MQ=255)                        ccGCTATCTGAAAACCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGCTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAg                                                                                                                            <  1:41800/150‑1 (MQ=255)                           cTATCTGAAAACCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCa                                                                                                                         >  1:1026995/1‑150 (MQ=255)                             aTCTGAAAACCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATc                                                                                                                       <  2:1146619/150‑1 (MQ=255)                                  aaaaCCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCAc                                                                                                                  >  1:1924016/1‑150 (MQ=255)                                  aaaaCCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCAc                                                                                                                  >  1:1738108/1‑150 (MQ=255)                                  aaaaCCTGGCTGGTATGGCGACAAGGTACTGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTCAGCAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCAc                                                                                                                  <  1:1879164/150‑1 (MQ=255)                                      ccTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAac                                                                                                              >  1:1478695/1‑150 (MQ=255)                                                     gacgaGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGgga                                                                                               <  2:1478695/150‑1 (MQ=255)                                                         aGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGAt                                                                                           <  1:782903/150‑1 (MQ=255)                                                            tACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGACATCAGCACGAACACCCTTTCGCTGGGAGGATCAg                                                                                        >  1:209286/1‑150 (MQ=255)                                                                 tctcGCGCAGTTTGAGCATGGTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGACATCAGCACGAACACCCTTTCGCTGGGAGGATCAGataat                                                                                   <  2:209286/150‑1 (MQ=255)                                                                   tcGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAagt                                                                                                                                                 >  1:1598985‑M2/1‑83 (MQ=255)                                                                   tcGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAagt                                                                                                                                                 <  2:1598985‑M2/86‑4 (MQ=255)                                                                   tcGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAg                                                                                 <  2:1738108/150‑1 (MQ=255)                                                                           tttGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCa                                                                         >  2:829100/1‑150 (MQ=255)                                                                           tttGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGAGAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCa                                                                         >  2:1863283/1‑150 (MQ=255)                                                                                    gTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGaaa                                                                <  2:1026995/150‑1 (MQ=255)                                                                                        gTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAaggag                                                            >  2:1248930/1‑150 (MQ=255)                                                                                         tGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAaggagg                                                           <  1:1248930/150‑1 (MQ=255)                                                                                          gAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAg                                                                                                                            <  2:1254314/84‑1 (MQ=255)                                                                                          gAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAg                                                                                                                            >  1:1254314/1‑84 (MQ=255)                                                                                          gAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAggg                                                          >  1:1799171/1‑150 (MQ=255)                                                                                                  ttGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCt                                                                     <  1:195016/131‑1 (MQ=255)                                                                                                  ttGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCt                                                                     >  2:195016/1‑131 (MQ=255)                                                                                                  ttGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCa                                                  <  1:829100/150‑1 (MQ=255)                                                                                                    gaagaaGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCTATCCTCGAAAGGAGGGTCGTACCATg                                                >  2:93974/1‑150 (MQ=255)                                                                                                     aagaagGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGaaa                                                                >  2:1638547/1‑133 (MQ=255)                                                                                                     aagaagGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGaaa                                                                <  1:1638547/133‑1 (MQ=255)                                                                                                     aagaagGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGc                                               <  2:1799171/150‑1 (MQ=255)                                                                                                      agaagaCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCg                                              >  2:739888/1‑150 (MQ=255)                                                                                                      agaagGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCa                                                                                         <  1:1054358/107‑1 (MQ=255)                                                                                                      agaagGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCa                                                                                         >  2:1054358/1‑107 (MQ=255)                                                                                                           gCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGTATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAAcc                                         >  2:1821406/1‑150 (MQ=255)                                                                                                                   aGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAACCATCACTAt                                 <  1:1529444/150‑1 (MQ=255)                                                                                                                    gCTGATGTTTTCACTCGATAACCTGATTATCTGAagtgaaaacatcagcttgcgcggccttcttcaagcaacttcacgaacatgctcaaactgcgcgagaccgtacc                                                                           >  2:57369‑M2/1‑34 (MQ=255)                                                                                                                    gCTGATGTTTTCACTCGATAACCTGATTATCTGAagtgaaaacatcagcttgcgcggccttcttcaagcaacttcacgaacatgctcaaactgcgcgagaccgtacc                                                                           <  1:57369‑M2/107‑74 (MQ=255)                                                                                                                      tGATGTTTTCACTCGATAACCTGATTATCTGAagtgaaaacatcagcttgcgcggccctcttcaagcaacttcac                                                                                                         <  2:1418648‑M2/75‑44 (MQ=255)                                                                                                                      tGATGTTTTCACTCGATAACCTGATTATCTGAagtgaaaacatcagcttgcgcggccctcttcaagcaacttcac                                                                                                         >  1:1418648‑M2/1‑32 (MQ=255)                                                                                                                      tGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGaa                                                                                                               >  2:957536/1‑69 (MQ=255)                                                                                                                      tGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGaa                                                                                                               <  1:957536/69‑1 (MQ=255)                                                                                                                      tGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAACCATCACTATgcg                              >  2:207767/1‑150 (MQ=255)                                                                                                                                aCTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAACCATCACTATGCGCTCGGCGCTg                    >  1:345167/1‑150 (MQ=255)                                                                                                                                 cTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAACCATCa                                     >  2:15143/1‑132 (MQ=255)                                                                                                                                 cTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAACCATCa                                     <  1:15143/132‑1 (MQ=255)                                                                                                                                    gATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAACCATCACTATGCGCTCGGCGCTGCCtt                >  1:1259817/1‑150 (MQ=255)                                                                                                                                         ccTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAACCATCACTATGCGCTCGGCGCTGCCTTGCTGa           <  1:1689135/150‑1 (MQ=255)                                                                                                                                            gATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAACCATCACTATGCGCTCGGCGCTGCCTTGCTGATCa        >  2:1577950/1‑150 (MQ=255)                                                                                                                                                 tCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAACCATCACTATGCGCTCGGCGCTGCCTTGCTGATCACCCTg   >  2:1207143/1‑150 (MQ=255)                                                                                                                                                 tCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAACCATCACTATGCGCTCGGCGCTGCCTTGCTGATCACCCTg   <  1:1863283/150‑1 (MQ=255)                                                                                                                                                  cTGAAGTGAATTTCACCGCCATGACCAGGGATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAACCATAACTATGCGCTCGGCGCTGCCTTGCTGATCACCCTgg  >  1:356483/1‑150 (MQ=255)                                                                                                                                                  cTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAACCATCACTATGCGCTCGGCGCTGCCTTGCTGATCACCCTgg  <  2:1924016/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GCCTGGCCAATGTCGGAGGACTTCCGCTATCTGAAAACCTGGCTGGTATGGCGACGAGGTACGGTCTCGCGCAGTTTGAGCATGTTCGTGAAGTTGCTTGAAGAAGGCCGCGCAAGCTGATGTTTTCACTCGATAACCTGATTATCTGAAGTGAATTTCACCGCCATGACCAGGCATCAGCACGAACACCCTTTCGCTGGGAGGATCAGATAATAGGTAAGCCATCCTCGAAAGGAGGGTCGTACCATGCGTAACCATCACTATGCGCTCGGCGCTGCCTTGCTGATCACCCTGG  >  NC_002947/3571762‑3572056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.