| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4016197 | 60 (0.820) | 6 (0.080) | 6/246 | NT | 9.1% | coding (55/1410 nt) | PP_3544 | GntR family transcriptional regulator |
| ? | NC_002947 | = 4016216 | 60 (0.830) | coding (74/1410 nt) | PP_3544 | GntR family transcriptional regulator | |||||
CCCCATGAACCGCTGATCCCTTACACTCACGCCACCTTGCCTGCCAGGCTTGGACAGAAGGCCAGAATGAAACGCTACGAACGCTTCGCCGATGACATTGCCGAACTGATCCGCTCCGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4016077‑4016197‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGCT‑GGCCGGGGCCCAGCACCCCGGAGCGGATCAGTTCGGCAATGTCATCGGCGAAGCGTTCGTAGCGTTTCATTCTGGCCTTCTGTCCAAGCCTGGCAGGCAAGGTGGCGTGAGTGTAAG < NC_002947/4016216‑4016096 CCCCATGAACCGCTGATCCCTTACACTCACGCCACCTTGCCTGCCAGGCTTGGACAGAAGGCCAGAATGAAACGCTACGAACGCTTCGCCGATGACATTGCCGAACTGATCCGCTCCGGGGTGCT‑GGCCGGGGCCCAGCAC < 1:86557/141‑1CCCCATGAACCGCTGATCCCTTACACTCACGCCACCTTGCCTGCCAGGCTTGGACAGAAGGCCAGAATGAAACGCTACGAACGCTTCGCCGATGACATTGCCGAACTGATCCGCTCCGGGGTGCT‑GGCCGGGGCCCAGCAC > 2:86557/1‑141 AATGAAACGCTACGAACGCTTCGCCGATGACATTGCCGAACTGATCCGCTCCGGGGCGCT‑GGCCGGGGCCCAGCACCCCGGAGCG > 1:1257783/1‑85 AATGAAACGCTACGAACGCTTCGCCGATGACATTGCCGAACTGATCCGCTCCGGGGCGCT‑GGCCGGGGCCCAGCACCCCGGAGCG < 2:1257783/85‑1 CTGATCCGCTCCGGGGTGCTGGGCCCCGG‑CCAGCGCCCCGGAGCGGATCAGTTCGGCAATGTCATCGGCGAAGCGTTCGTAGCGTTTCATTCTGGCCTTCTGTCCAAGCCTGGCAGGCAAGGTGGCGTGAGTGTAAG < 1:941612/137‑1 CTGATCCGCTCCGGGGTGCTGGGCCCCGG‑CCAGCGCCCCGGAGCGGATCAGTTCGGCAATGTCATCGGCGAAGCGTTCGTAGCGTTTCATTCTGGCCTTCTGTCCAAGCCTGGCAGGCAAGGTGGCGTGAGTGTAAG > 2:941612/1‑137 CCCCATGAACCGCTGATCCCTTACACTCACGCCACCTTGCCTGCCAGGCTTGGACAGAAGGCCAGAATGAAACGCTACGAACGCTTCGCCGATGACATTGCCGAACTGATCCGCTCCGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4016077‑4016197‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGCT‑GGCCGGGGCCCAGCACCCCGGAGCGGATCAGTTCGGCAATGTCATCGGCGAAGCGTTCGTAGCGTTTCATTCTGGCCTTCTGTCCAAGCCTGGCAGGCAAGGTGGCGTGAGTGTAAG < NC_002947/4016216‑4016096 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |