New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 439395791 (1.250)6 (0.090) 6/232 NT 6.7% coding (1059/1488 nt) PP_3869 sheath protein
?NC_002947 = 4393980 82 (1.200)coding (1036/1488 nt) PP_3869 sheath protein

GTACTTGCTGGTGATTCGCCCCTTAAGGAAATTGATGATGTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4393804‑4393957
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgctgACCCATGGCATTGCCACGGGCTACAGCAGCGGCGGCGTGCAGCGCATCGAGCGCGGCATCACCACATACCGGCAGAACGCTCTGGGTCAGCCCGACAATTCATTCCTGGACAGCGAGACGCTGCATCAGTCGGCCTACATCATCAATTT  <  NC_002947/4393980‑4393832
                                                                                                                                                                                                                                                                                                               
GTACTTGCTGGTGATTCGCCCCTTAAGGAAATTGATGATGTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCT                                                                                                                                                           >  2:922719/1‑150
    TTGCTGGTGATTCGCCCCTTAAGGAAATTGATGATGTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTG                                                                                                                                                       <  1:1529735/150‑1
    TTGCTGGTGATTCGCCCCTTAAGGAAATTGATGATGTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTG                                                                                                                                                       >  2:1589312/1‑150
                          GGAAATTGATGATGTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGTCGCTGCTGACCCATGGCATTGCCACGGGCT                                                                                                                                 <  2:196152/150‑1
                                TGATGATGTCGGCCGACTGATGCAGCGTCTCGCTGGCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGTCGCTGCTGACCCATGGCATTGCCACGGGCTACAGCA                                                                                                                           <  1:893511/150‑1
                                                               GCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGACCCATGGCATTGCCACGGGCTACAGCAGC                                                                                                                         >  1:261840/1‑121
                                                               GCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGACCCATGGCATTGCCACGGGCTACAGCAGC                                                                                                                         <  2:261840/121‑1
                                                                                    GGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGACCCATGGCATTGCCACGGGCTACAGCAGCGGC                                                                                                                      <  1:1921696/103‑1
                                                                                    GGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGACCCATGGCATTGCCACGGGCTACAGCAGCGGC                                                                                                                      >  2:1921696/1‑103
                                                                                                                                                       CTGACCCATGGCATTGCCACGGGCTACAGCAGCGACGGCGTGCAGCGCATCGAGCGCGGCATCACCACATACCGGCAGAACGCTCTGG                                                                  >  1:653861/1‑88
                                                                                                                                                       CTGACCCATGGCATTGCCACGGGCTACAGCAGCGACGGCGTGCAGCGCATCGAGCGCGGCATCACCACATACCGGCAGAACGCTCTGG                                                                  <  2:653861/88‑1
                                                                                                                                                         GACCCATGGCATTGCCACGGGCTACAGCAGCGGCGGCGTGCAGCGCATCGAGCGCGGCATCACCACATACCGGCAGAACGCTCTGGGTCAGCCCGACAATTCATTCCTGGACAGCGAGACGCTGCATCAGTCGGCCTACATCATCAATTT  >  2:1856599/1‑150
                                                                                                                                                         GACCCATGGCATTGCCACGGGCTACAGCAGCGGCGGCGTGCAGCGCATCGAGCGCGGCATCACCACATACCGGCAGAACGCTCTGGGT                                                                >  1:709696/1‑88
                                                                                                                                                         GACCCATGGCATTGCCACGGGCTACAGCAGCGGCGGCGTGCAGCGCATCGAGCGCGGCATCACCACATACCGGCAGAACGCTCTGGGT                                                                <  2:709696/88‑1
                                                                                                                                                                                                                                                                                                               
GTACTTGCTGGTGATTCGCCCCTTAAGGAAATTGATGATGTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4393804‑4393957
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgctgACCCATGGCATTGCCACGGGCTACAGCAGCGGCGGCGTGCAGCGCATCGAGCGCGGCATCACCACATACCGGCAGAACGCTCTGGGTCAGCCCGACAATTCATTCCTGGACAGCGAGACGCTGCATCAGTCGGCCTACATCATCAATTT  <  NC_002947/4393980‑4393832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.