New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 439395791 (1.250)6 (0.090) 6/232 NT 6.7% coding (1059/1488 nt) PP_3869 sheath protein
?NC_002947 = 4393980 82 (1.200)coding (1036/1488 nt) PP_3869 sheath protein

Only 100 of 108 total aligned reads displayed.

AAATTGATGATGTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGAGGCATAGCCAGCCGCTTGACGCCAC  >  NC_002947/4393832‑4394128
                                                                                                                                                    |                                                                                                                                                    
         atgTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGAc                                                                                                                                            <  1:220707/150‑1 (MQ=255)
           gTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCACTGACATGGGAAAGCAGGGACTg                                                                                                                                          >  2:1379998/1‑150 (MQ=255)
           gTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTg                                                                                                                                          <  1:1915072/150‑1 (MQ=255)
               gCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGc                                                                                                                                      >  1:86355/1‑150 (MQ=255)
                    cTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGt                                                                                                                                 >  2:1486571/1‑150 (MQ=255)
                     tGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTc                                                                                                                                >  1:1857430/1‑150 (MQ=255)
                         gCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCGGCa                                                                                                                            >  1:1508567/1‑150 (MQ=255)
                         gCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCa                                                                                                                            >  1:1271642/1‑150 (MQ=255)
                              gTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAg                                                                                                                       <  2:86355/150‑1 (MQ=255)
                                 tcGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGa                                                                                                                    >  2:442670/1‑150 (MQ=255)
                                 tcGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGa                                                                                                                    <  1:1824861/150‑1 (MQ=255)
                                            gaatgaatTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACgg                                                                                                         >  2:1083587/1‑150 (MQ=255)
                                                 aatTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCg                                                                                                    >  1:113139/1‑150 (MQ=255)
                                                 aatTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCg                                                                                                    >  1:1469167/1‑150 (MQ=255)
                                                  atTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCgg                                                                                                   <  1:109193/150‑1 (MQ=255)
                                                  atTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCgg                                                                                                   >  1:878256/1‑150 (MQ=255)
                                                   ttGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGa                                                                                                                    <  2:703878/132‑1 (MQ=255)
                                                   ttGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGa                                                                                                                    >  1:703878/1‑132 (MQ=255)
                                                   ttGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCggg                                                                                                  <  1:1589312/150‑1 (MQ=255)
                                                   ttGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTACCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCggg                                                                                                  <  1:1097985/150‑1 (MQ=255)
                                                      tCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGTTCGGCATGAAGCGATCACCCGACGGCGCCGGGGTg                                                                                               <  1:458964/150‑1 (MQ=255)
                                                      tCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTg                                                                                               >  1:1332543/1‑150 (MQ=255)
                                                      tCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTCATGCCGCGCTCGATGCGCAGCACGCCGCCGCTGCTGTAGCCCGTGGCAACGCCATGGGCCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTg                                                                                               <  1:1533521/150‑1 (MQ=255)
                                                        gggCTGACCCAGAGCGTTGTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGAt                                                                                             <  2:310511/150‑1 (MQ=255)
                                                        gggCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGAt                                                                                             <  2:1469167/150‑1 (MQ=255)
                                                        gggCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGAt                                                                                             <  2:308945/150‑1 (MQ=255)
                                                        gggCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGAt                                                                                             <  1:1083587/150‑1 (MQ=255)
                                                            tGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCg                                                                                         >  1:311275/1‑150 (MQ=255)
                                                              aCCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGCTGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGtt                                                                                       >  1:1850043/1‑150 (MQ=255)
                                                              aCCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTc                                                                                                                                                     >  1:709696‑M2/1‑87 (MQ=255)
                                                              aCCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTc                                                                                                                                                     <  2:709696‑M2/88‑2 (MQ=255)
                                                              aCCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCGGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGtt                                                                                       <  2:1508567/150‑1 (MQ=255)
                                                              aCCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGtt                                                                                       <  1:1488751/150‑1 (MQ=255)
                                                                ccAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGGTGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGCCGGCGCCGGGGTGATGCCGTTGa                                                                                     >  1:515846/1‑150 (MQ=255)
                                                                ccAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGTCGCTGCTGTAGCCCGTGGCAATGCCATGGGTcag                                                                                                                                                   >  1:653861‑M2/1‑85 (MQ=255)
                                                                ccAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGa                                                                                     <  1:1474821/150‑1 (MQ=255)
                                                                ccAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGa                                                                                     >  1:335117/1‑150 (MQ=255)
                                                                ccAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGa                                                                                     >  1:165358/1‑150 (MQ=255)
                                                                  agagCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAGTGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGc                                                                                   >  1:1913391/1‑150 (MQ=255)
                                                                  agagCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGc                                                                                   >  2:430049/1‑150 (MQ=255)
                                                                      cGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCAc                                                                               >  2:743014/1‑150 (MQ=255)
                                                                       gTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGc                                                                                                                                         >  1:47550/1‑91 (MQ=255)
                                                                       gTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGc                                                                                                                                         <  2:47550/91‑1 (MQ=255)
                                                                       gTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGc                                                                                                                                         <  1:1152391/91‑1 (MQ=255)
                                                                        ttCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCg                                                                             >  2:811800/1‑150 (MQ=255)
                                                                          cTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGt                                                                           <  1:811800/150‑1 (MQ=255)
                                                                          cTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGt                                                                           >  1:105215/1‑150 (MQ=255)
                                                                            gCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGttt                                                                         >  2:712777/1‑150 (MQ=255)
                                                                            gCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGttt                                                                         <  1:957201/150‑1 (MQ=255)
                                                                              cGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGAc                                                                                                                                            >  2:180958/1‑81 (MQ=255)
                                                                              cGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGAc                                                                                                                                            <  1:180958/81‑1 (MQ=255)
                                                                               ggTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGtt                                                                          <  2:774278/146‑1 (MQ=255)
                                                                               ggTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGtt                                                                          >  1:774278/1‑146 (MQ=255)
                                                                                gTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGt                                                                     >  2:81114/1‑150 (MQ=255)
                                                                                 tATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTc                                                                    <  2:311275/150‑1 (MQ=255)
                                                                                    gtggtgATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGc                                                                 <  2:113139/150‑1 (MQ=255)
                                                                                        tgATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCAT‑GGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCgcgc                                                            >  2:1072475/1‑150 (MQ=255)
                                                                                         gATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCgcgc                                                            <  2:1850043/150‑1 (MQ=255)
                                                                                             ccGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCggg                                                        >  1:1483840/1‑150 (MQ=255)
                                                                                             ccGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCAACGGTTTGCGTCGGCCGCGCCggg                                                        >  2:537127/1‑150 (MQ=255)
                                                                                              cgcgCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGt                                                       <  1:743014/150‑1 (MQ=255)
                                                                                                cgcTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCa                                                     <  1:922719/150‑1 (MQ=255)
                                                                                                cgcTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCa                                                     <  1:546754/150‑1 (MQ=255)
                                                                                                       ttcgcTGCACGCCGCCGCTTCTGTAGCCCGTGGCAGTGCCATGGGTCACCAGCGACTGCCGCTCCGTCAGCATGAATCGATCACCCGACGGCGCTGGGGTGATGCCGTTGAGCTTACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCgaga                                              >  2:782199/3‑150 (MQ=255)
                                                                                                       tGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCgaga                                              <  1:1379998/150‑1 (MQ=255)
                                                                                                        gcgcTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGAt                                             <  1:192725/150‑1 (MQ=255)
                                                                                                               aCGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACAcc                                      >  2:895687/1‑150 (MQ=255)
                                                                                                                   cgccgcTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAg                                  <  2:165358/150‑1 (MQ=255)
                                                                                                                    gccgcTGCTGTAGCCCGTGGCAATGCCATGGGTcagcagcggcggcgtgcagcgcatcgagcgcggcatcaccacataccggcagaacgctctgggtcagccc                                                                                <  1:1921696‑M2/103‑71 (MQ=255)
                                                                                                                    gccgcTGCTGTAGCCCGTGGCAATGCCATGGGTcagcagcggcggcgtgcagcgcatcgagcgcggcatcaccacataccggcagaacgctctgggtcagccc                                                                                >  2:1921696‑M2/1‑33 (MQ=255)
                                                                                                                    gccgcTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGttt                                                                         <  1:1073861/110‑1 (MQ=255)
                                                                                                                    gccgcTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGttt                                                                         >  2:1073861/1‑110 (MQ=255)
                                                                                                                    gccgcTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGt                                 >  1:1172657/1‑150 (MQ=255)
                                                                                                                    gccgcTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGACGGGGTGATGACGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGCGTCAGCCGAGATGAACACCGCAGt                                 <  1:782199/150‑1 (MQ=255)
                                                                                                                     ccgcTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGc                                                   <  1:1932644/131‑1 (MQ=255)
                                                                                                                     ccgcTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGc                                                   >  2:1932644/1‑131 (MQ=255)
                                                                                                                      cgcTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCgg                                                         >  2:1211960/1‑124 (MQ=255)
                                                                                                                      cgcTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCgg                                                         <  1:1211960/124‑1 (MQ=255)
                                                                                                                       gctgctGTAGCCCGTGGCAATGCCATGGGTcagcagcggcggcgtgcagcgcatcgagcgcggcatcaccacataccggcagaacgctctgggtcagcccgacaattcattcctggacagc                                                           >  1:261840‑M2/1‑30 (MQ=255)
                                                                                                                       gctgctGTAGCCCGTGGCAATGCCATGGGTcagcagcggcggcgtgcagcgcatcgagcgcggcatcaccacataccggcagaacgctctgggtcagcccgacaattcattcctggacagc                                                           <  2:261840‑M2/121‑92 (MQ=255)
                                                                                                                        ctgctgTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCgg                             <  2:1332543/150‑1 (MQ=255)
                                                                                                                         tgctgTAGCCCGTGGCAATGCCATGGGTcagcagcgacggcgtgcagcgcatcgagcgcggcatcaccacataccggcagaacgctctgggtcagcccgacaattcattcctggccagcgagacgctgcatcagtcggccgacatcatca                            <  1:893511‑M2/150‑123 (MQ=255)
                                                                                                                          gctgTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGa                           >  2:675817/1‑150 (MQ=255)
                                                                                                                          gctgTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGa                           <  2:1857430/150‑1 (MQ=255)
                                                                                                                           ctgTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGAg                          <  1:675817/150‑1 (MQ=255)
                                                                                                                           ctgTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGAg                          <  1:13082/150‑1 (MQ=255)
                                                                                                                             gTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGAGGc                        >  2:1018869/1‑150 (MQ=255)
                                                                                                                               gacccatGGCATTGCCACGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTGGGCCGCGCCGGGTCAGCCGAGCTGAGCACCGCAGTGAGGGCGACAt                      >  1:521294/7‑150 (MQ=255)
                                                                                                                               aGCCCGTGGCAATGCCATGGGTcagcagcgacggcgtgcagcgcatcgagcgcggcatcaccacataccggcagaacgctctgggtcagcccgacaattcattcctggacagcgagacgctgcatcagtcggcctacatcatcaatttcc                      <  2:196152‑M2/150‑129 (MQ=255)
                                                                                                                                 cccGTGGCAATGCCATGGGTCAGCAGCGACTGCGGCCACGCCAGGATGATAATAGCACCCGACGGCTCCGGTTGGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGAGGCATag                    >  1:1493780/1‑150 (MQ=255)
                                                                                                                                 cccGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGAGGCATag                    <  2:1271642/150‑1 (MQ=255)
                                                                                                                                      ggCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGAGGCATagccagc               <  2:1172657/150‑1 (MQ=255)
                                                                                                                                         aaTGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGAGGCATAGCCAGCCGc            >  1:1602259/1‑150 (MQ=255)
                                                                                                                                           tGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGAAGGCATAGCCAGCCTCtt          <  1:537127/150‑1 (MQ=255)
                                                                                                                                              cATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGAGTCAGCCGAGATGAACACCGCAGTGCGGGAGGCATAGCCAGCCGCTTGAc       <  1:712777/150‑1 (MQ=255)
                                                                                                                                               aTGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGAGGCATAGCCAGCCGCTTGACg      <  2:770290/150‑1 (MQ=255)
                                                                                                                                                   gTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGAGGCATAGCCAGCCGCTTGACGCcac  >  1:1165546/1‑150 (MQ=255)
                                                                                                                                                    tCAGCAGCGACTGGCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGAGGc                        >  1:347327/1‑127 (MQ=255)
                                                                                                                                                    tCAGCAGCGACTGGCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGAGGc                        <  2:347327/127‑1 (MQ=255)
                                                                                                                                                    tCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCa                                   >  2:1353863/1‑116 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
AAATTGATGATGTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGTAGCCCGTGGCAATGCCATGGGTCAGCAGCGACTGCCGCTCGGTCAGCATGAAGCGATCACCCGACGGCGCCGGGGTGATGCCGTTGAGCTCACCGGTTTGCGTCGGCCGCGCCGGGTCAGCCGAGATGAACACCGCAGTGCGGGAGGCATAGCCAGCCGCTTGACGCCAC  >  NC_002947/4393832‑4394128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.