| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4931718 | 56 (0.770) | 4 (0.060) | 4/234 | NT | 6.7% | coding (545/741 nt) | fliA | RNA polymerase sigma 28 factor |
| ? | NC_002947 | = 4931729 | 58 (0.840) | coding (534/741 nt) | fliA | RNA polymerase sigma 28 factor | |||||
CACATTGGCTGTGCAACTGGCTGACCCGCGACTCGCTGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4931566‑4931718‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggaGGAGGAGCGCTTCCAGGCTGCCCTGACCGAGGCCATCGCCAACCTGCCGGAGCGTGAGCGCCTGGTGCTGGCGCTGTACTACGACGAAGAGCTGAACCTCAAGGAAATCGGTGAGGTGCTGGGTGTCAGCGAGTCGCGGGTCAGCC < NC_002947/4931729‑4931584 CACATTGGCTGTGCAACTGGCTGACCCGCGACTCGCTGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCT > 2:1517414/1‑150 CTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAGGAGGAGCGCTTCCAGGCTGCCCTGACC > 1:706189/1‑120 CTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAGGAGGAGCGCTTCCAGGCTGCCCTGACC < 2:706189/120‑1 GCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAGGAGGAGCGCTTCCAGGCTGCC < 1:189089/103‑1 GCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAGGAGGAGCGCTTCCAGGCTGCC > 2:189089/1‑103 GCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGC > 1:351415/1‑58 GCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGC < 2:351415/58‑1 GCCTGGAGGAGGAGCGCTTCCAGGCTGCCCTGACCGAGGCCATCGCCAACCTGCCGGAGCGTGAGCGCCTGGTGCTGGCGCTGTACTACGACGAAGAGCTGAACCTCAAGGAAATCGGTGAGGTGCTGGGTGTCAGCGAGTCGCGGGTCA < 1:1398108/150‑1 GCCTGGAGGAGGAGCGCTTCCAGGCTGCCCTGACCGAGGCCATCGCCAACCTGCCGGAGCGTGAGCGCCTGGTGCTGGCGCTGTACTACGACGAAGAGCTGAACCTCAAGGAAATCGGTGAGGTGCTGGGTGTCAGCGAGTCGCGGGTCA > 2:1398108/1‑150 TGGAGGAGGAGCGCTTCCAGGCTGCCCTGACCGAGGCCATCGCCAACCTGCCGGAGCGTGAGCGCCTGGTGCTGGCGCTGTACTACGACGAAGAGCTGAACCTCAAGGAAATCGGTGAGGTGCTGGGTGTCAGCGAGTCGCGGGTCAGCC > 2:208517/1‑150 TGGAGGAGGAGCGCTTCCAGGCTGCCCTGACCGAGGCCATCGCCAACCTGCCGGAGCGTGAGCGCCTGGTGCGGGGGCTGTACTACGACACAGAGCTGAACTTCAGTGAAATCGGTGAGGTGCTGGGTGTCAGCGAGTCGCGGGTCAGCC > 1:1400756/1‑150 GGAGGAGGAGCGCTTCCAGGCTGCCCTGACCGAGGCCATCGCCAACCTGCCGGAGCGTGAGCGCCTGGTGCTGGCGCTGTACTACGACGAAGAGCTGAACCTCAAGGAAATCGGTGAGGTGCTGG > 1:17155/1‑125 GGAGGAGGAGCGCTTCCAGGCTGCCCTGACCGAGGCCATCGCCAACCTGCCGGAGCGTGAGCGCCTGGTGCTGGCGCTGTACTACGACGAAGAGCTGAACCTCAAGGAAATCGGTGAGGTGCTGG < 2:17155/125‑1 CACATTGGCTGTGCAACTGGCTGACCCGCGACTCGCTGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4931566‑4931718‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggaGGAGGAGCGCTTCCAGGCTGCCCTGACCGAGGCCATCGCCAACCTGCCGGAGCGTGAGCGCCTGGTGCTGGCGCTGTACTACGACGAAGAGCTGAACCTCAAGGAAATCGGTGAGGTGCTGGGTGTCAGCGAGTCGCGGGTCAGCC < NC_002947/4931729‑4931584 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |