New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4931718	56 (0.770)	4 (0.060)	4/234	NT	6.7%	coding (545/741 nt)	fliA	RNA polymerase sigma 28 factor
	?	NC_002947	= 4931729	58 (0.840)					coding (534/741 nt)	fliA	RNA polymerase sigma 28 factor

GGCTGACCCGCGACTCGCTGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTGCCCAGGGTATCGTTCAAGATCCCGTAGTAATCATCGAGACTCAATT  >  NC_002947/4931584‑4931877                                                                                                                                                  |                                                                                                                                                     ggCTGACCCGCGACTCGCTGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCtcca                                                                                                                                                  >  2:208517‑M2/1‑146 (MQ=255) ggCTGACCCGCGACTCGCTGACACCCAGCACCTCACCGATTTCACTGAAGTTCAGCTCTGTGTCGTAGTACAGCCCCCGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCtcca                                                                                                                                                  >  1:1400756‑M2/1‑146 (MQ=255)    tGACCCGCGACTCGCTGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCtccaggc                                                                                                                                               >  2:1398108‑M2/1‑143 (MQ=255)    tGACCCGCGACTCGCTGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCtccaggc                                                                                                                                               <  1:1398108‑M2/150‑8 (MQ=255)        ccGCGACTCGCTGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCcgcg                                                                                                                                           >  2:1218055/1‑150 (MQ=255)          gcgACTCGCTGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCcgcgcg                                                                                                                                         >  1:1173854/1‑150 (MQ=255)            gACTCGCTGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATCGCCTCGGGCAGGGCATCCTGGAAGCGCTCTTCCTCCAGGAAGCGCGCa                                                                                                                                       >  2:1287555/1‑150 (MQ=255)             aCTCGCTGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCgcgcgccg                                                                                                                                      >  1:571885/1‑148 (MQ=255)               tCGCTGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGt                                                                                                                                    <  2:571885/150‑1 (MQ=255)                cGCTGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGtt                                                                                                                                   >  2:1749032/1‑150 (MQ=255)                   tGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGa                                                                                                                                >  1:597901/1‑150 (MQ=255)                       acCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTg                                                                                                                            >  2:569593/1‑150 (MQ=255)                       acCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTg                                                                                                                            <  2:1879255/150‑1 (MQ=255)                         ccAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCtcc                                                                                                                                                   <  2:17155‑M2/125‑4 (MQ=255)                         ccAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCtcc                                                                                                                                                   >  1:17155‑M2/1‑122 (MQ=255)                         ccAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTg                                                                                                                            <  2:26346/148‑1 (MQ=255)                         ccAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTg                                                                                                                            >  1:26346/1‑148 (MQ=255)                         ccAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGc                                                                                                                          <  1:700613/150‑1 (MQ=255)                            gCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCAc                                                                                                                       >  2:267044/1‑150 (MQ=255)                                cTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGgc                                                                                                                   <  1:1749032/150‑1 (MQ=255)                                  cACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGgcgc                                                                                                                 >  1:226154/1‑150 (MQ=255)                                  cACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGgcgc                                                                                                                 >  2:1828966/1‑150 (MQ=255)                                   catgATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGcc                                                                                                                >  1:1827349/4‑150 (MQ=255)                                       aTTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATcc                                                                                                            <  1:857345/150‑1 (MQ=255)                                       aTTTCCTTGAGGTTCAGCTCTTCGACGTGGTACAGCGCCAGCACCAGGCGCTCACGCTCCGACAGATTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATcc                                                                                                            >  1:1807713/1‑150 (MQ=255)                                          tCCTTGAGGTTCAGCTCACGGGCTGAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCa                                                                                                         <  1:99301/150‑1 (MQ=255)                                           ccTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCAt                                                                                                        <  1:267044/150‑1 (MQ=255)                                             ttGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCCGGGGGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGc                                                                                                      >  1:1397865/1‑150 (MQ=255)                                             ttGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGc                                                                                                      >  2:831110/1‑150 (MQ=255)                                                  gTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTcc                                                                                                 <  1:1334412/150‑1 (MQ=255)                                                  gTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTcc                                                                                                 >  2:181427/1‑150 (MQ=255)                                                  gTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTcc                                                                                                 >  2:779365/1‑150 (MQ=255)                                                     cAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTc                                                                                              <  1:875493/150‑1 (MQ=255)                                                                 gtagtaCAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTc                                                                                  <  1:779365/150‑1 (MQ=255)                                                                 gtagtaCAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTc                                                                                  <  2:226154/150‑1 (MQ=255)                                                                     taCAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGGAGTCCTGc                                                                              >  1:681443/1‑150 (MQ=255)                                                                         gcgcCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCcgcgcg                                                                                                                                         <  2:1081771/87‑1 (MQ=255)                                                                         gcgcCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCcgcgcg                                                                                                                                         >  1:1081771/1‑87 (MQ=255)                                                                         gcgcCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACa                                                                          <  2:996317/150‑1 (MQ=255)                                                                         gcgcCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACa                                                                          >  1:189224/1‑150 (MQ=255)                                                                          cgcCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAg                                                                         <  2:762550/150‑1 (MQ=255)                                                                             cAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGgtc                                                                      >  1:744998/1‑150 (MQ=255)                                                                             cAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGgtc                                                                      <  2:1827349/150‑1 (MQ=255)                                                                                 aCCAGGCGCTCACGCTCCGGTAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCa                                                                  >  2:1300738/1‑150 (MQ=255)                                                                                   cAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGa                                                                                                                                >  2:179430/1‑86 (MQ=255)                                                                                   cAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGa                                                                                                                                <  1:179430/86‑1 (MQ=255)                                                                                   cAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCaaa                                                                <  2:1173854/150‑1 (MQ=255)                                                                                        gcTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGa                                                           <  2:744998/150‑1 (MQ=255)                                                                                                tCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAggcgg                                                   <  2:189224/150‑1 (MQ=255)                                                                                                  cggtaGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCt                                                 <  1:1300738/146‑1 (MQ=255)                                                                                                   ggCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTg                                                >  2:451122/1‑150 (MQ=255)                                                                                                       ggTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTGCCCa                                            <  2:457907/150‑1 (MQ=255)                                                                                                        gTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTGCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTGCCCAg                                           <  2:1397865/150‑1 (MQ=255)                                                                                                         ttGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTGCCCAgg                                          <  1:1828966/150‑1 (MQ=255)                                                                                                         ttGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTGCCCAgg                                          <  1:831110/150‑1 (MQ=255)                                                                                                         ttGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTGCCCAgg                                          <  1:451122/150‑1 (MQ=255)                                                                                                                     tCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCa                                                                                                               <  2:1402578/69‑1 (MQ=255)                                                                                                                     tCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCa                                                                                                               >  1:1402578/1‑69 (MQ=255)                                                                                                                       ggTCAGGGCAGCCTGGAAGCGCTCCTCCtccaggctgccctgaccgaggccatcgccaacctgccggagcgtgagcgcctggtgctggcgctgtactacgacgaagagctgaacctcaag                                                          >  1:706189‑M2/1‑28 (MQ=255)                                                                                                                       ggTCAGGGCAGCCTGGAAGCGCTCCTCCtccaggctgccctgaccgaggccatcgccaacctgccggagcgtgagcgcctggtgctggcgctgtactacgacgaagagctgaacctcaag                                                          <  2:706189‑M2/120‑93 (MQ=255)                                                                                                                           aGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTGCCCAGGGTATCGTTCAAGATCCCg                        <  2:597901/150‑1 (MQ=255)                                                                                                                             ggCAGCCTGGAAGCGCTCCTCCtccaggctgccctgaccgaggccatcgccaacctgccggagcgtgagcgcctggtgctggcgctgtactacgacgaagagc                                                                     >  2:189089‑M2/1‑22 (MQ=255)                                                                                                                             ggCAGCCTGGAAGCGCTCCTCCtccaggctgccctgaccgaggccatcgccaacctgccggagcgtgagcgcctggtgctggcgctgtactacgacgaagagc                                                                     <  1:189089‑M2/103‑82 (MQ=255)                                                                                                                             ggCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTGCCCAGGGTATCGTTCAAGATCCCgta                      <  1:1286700/150‑1 (MQ=255)                                                                                                                                aGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTGCCCAGGGTATCGTTCAAGATCCCgtagta                   >  1:343630/1‑150 (MQ=255)                                                                                                                                  ccTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTGCCCAGGGTATCGTTCAAGATCCCGTAGTAat                 >  2:315817/1‑150 (MQ=255)                                                                                                                                    tGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTgg                                                                                                                           <  1:1492143/42‑1 (MQ=255)                                                                                                                                    tGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTgg                                                                                                                           >  2:1492143/1‑42 (MQ=255)                                                                                                                                      gAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTGCCCAGGGTATCGTTCAAGATCCCGTAGTAatcatc             >  2:354708/1‑150 (MQ=255)                                                                                                                                                tcctccAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTGCCCAGGGTATCGTTCAAGATCCCGTAGTAATCATCGAGACTCAAt   >  1:53735/1‑150 (MQ=255)                                                                                                                                                 cctccAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTGCCCAGGGTATCGTTCAAGATCCCGTAGTAATCATCGAGACTCAAtt  <  2:343630/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GGCTGACCCGCGACTCGCTGACACCCAGCACCTCACCGATTTCCTTGAGGTTCAGCTCTTCGTCGTAGTACAGCGCCAGCACCAGGCGCTCACGCTCCGGCAGGTTGGCGATGGCCTCGGTCAGGGCAGCCTGGAAGCGCTCCTCCTCCAGGCCGCGCGCAGGTTCGACCTGGCCACTGGCGCCATCCTCATGCAGTCCTTCGTGCTCGCCGTCCTGCAACAGGTCGTCAAAGCTGAACAGGCGGCTGCCCAGGGTATCGTTCAAGATCCCGTAGTAATCATCGAGACTCAATT  >  NC_002947/4931584‑4931877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.