| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4933218 = | 59 (0.810) | 4 (0.060) | 4/234 | NT | 6.3% | coding (1276/1308 nt) | flhF | flagellar biosynthesis protein FlhF |
| ? | NC_002947 | 4933250 = | 63 (0.920) | coding (1244/1308 nt) | flhF | flagellar biosynthesis protein FlhF | |||||
CCATCAGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGAATGTGCAGCAGCAGGACGAGCCCAGCGAAGAGGCCATGGCC‑‑GACATGTTCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4933373‑4933218‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgctgGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGC > NC_002947/4933250‑4933397 CCATCAGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGTGGGGCCACCAGTTGGTCACGCGGGCGGTGAATGTGCAGCAGCAGGACGAGCCCAGCGAAGAGGCCATGGCC‑‑GACATGT > 2:1455756/1‑150CCATCAGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGAATGTGCAGCAGCAGGACGAGCCCAGCGAAGAGGCCATGGCC‑‑GACATGT < 1:1218280/150‑1CCATCAGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGAATGTGCAGCAGCAGGACGAGCCCAGCGAAGAGGCCATGGCC‑‑GACATGT > 2:236863/1‑150 CATCAGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGAATGTGCGGCAGCAGGACGAGCCCAGCGAAGAGGCCATGGCC‑‑GACATGTT > 2:1612451/1‑150 AGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGAATGTGCAGCAGCAGGACGAGCCCAGCGAAGAGGCCATGGCC‑‑GACATGTTCGCT < 2:94944/150‑1 ATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGAATGTGCAGCAGCAGGACGAGCCCAGCGAAGAGGCCATGGCC‑‑GACATGTTCGCT < 1:233721/146‑1 ATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGAATGTGCAGCAGCAGGACGAGCCCAGCGAAGAGGCCATGGCC‑‑GACATGTTCGCT > 2:233721/1‑146 CCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGAATGTGCAGCAGCAGGACGAGCCCAGCGAACATGTC‑‑GGCCATGGCCTCTTCGCTGGGCTCGTCCTGCTGCTGC < 1:1062699/150‑1 CCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGAATGTGCAGCAGCAGGACGAGCCCAGCGAAGAGGCCATGGCC‑‑GACATGTTCGCT > 1:1499981/1‑115 CCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGAATGTGCAGCAGCAGGACGAGCCCAGCGAAGAGGCCATGGCC‑‑GACATGTTCGCT < 2:1499981/115‑1 GCAGGACGAGCCCAGCGAAGAGGCCATGGCC‑‑GACATGTTCGC < 1:1874745/42‑1 GCAGGACGAGCCCAGCGAAGAGGCCATGGCC‑‑GACATGTTCGC > 2:1874745/1‑42 GCCCAGCGAAGAGGCCATGGCC‑‑GACATGTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCAT < 2:1062699/150‑1 CCAGCGAAAAGGCCATGGCC‑‑GACATGTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAG < 1:619129/98‑1 CCAGCGAAAAGGCCATGGCC‑‑GACATGTTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAG > 2:619129/1‑98 TTCGCTGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCC < 2:1400659/150‑1 TGGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAAGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGC < 2:346382/150‑1 CCATCAGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGAATGTGCAGCAGCAGGACGAGCCCAGCGAAGAGGCCATGGCC‑‑GACATGTTCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4933373‑4933218‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgctgGGCTCGTCCTGCTGCTGCACATTCACCGCCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGC > NC_002947/4933250‑4933397 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |