New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4933279 =	63 (0.860)	4 (0.060)	4/238	NT	6.8%	coding (1215/1308 nt)	flhF	flagellar biosynthesis protein FlhF
	?	NC_002947	4933306 =	49 (0.700)					coding (1188/1308 nt)	flhF	flagellar biosynthesis protein FlhF

GCTGCATCCTGACCAAACTCGATGAAACGGCAAGCCTTGGCGATGTGTTGAGCCTTGCCATCAGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4933430‑4933279 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGCCGGCCAG  >  NC_002947/4933306‑4933437                                                                                                                                                                                                                                                                                              GCTGCATCCTGACCAAACTCGATGAAACGGCAAGCCTTGGCGATGTGTTGAGCCTTGCCATCAGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGC                                                                                                                                        <  1:670915/150‑1                  CTCGATGAAACGGCAAGCCTTGGCGATGTGTTGAGCCTTGCCATCAGTCATGAACTGCCAGTGGCATATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGTGACCAACTGGTGGCCCCGCGGCAGGTGCAGGTCGTC                                                                                                                       <  1:1468393/150‑1                          AACGGCAAGCCTTGGCGATGTGTTGAGCCTTGCCATCCGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGCGACCAACTGGTGGCCCCGCGGCAGGTGCAGGT                                                                                                                           >  1:1568114/1‑138                          AACGGCAAGCCTTGGCGATGTGTTGAGCCTTGCCATCAGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGCGACCAACTGGTGGCCCCGCGGCAGGTGCAGGT                                                                                                                           <  2:1568114/138‑1                                                                                                                                       CACCAGTTGGTCACGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATATGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGCCGGCCAG  <  2:1468393/150‑1                                                                                                                                                                                                                                                                                              GCTGCATCCTGACCAAACTCGATGAAACGGCAAGCCTTGGCGATGTGTTGAGCCTTGCCATCAGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4933430‑4933279 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGCCGGCCAG  >  NC_002947/4933306‑4933437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.